d2a02f56a0e84d51213d44955b694ce7daace230
jnavarr5
  Fri May 31 11:41:50 2019 -0700
Updating redirected links for hg18, uiLinks cronjob.

diff --git src/hg/makeDb/trackDb/human/yaleBertoneTars.html src/hg/makeDb/trackDb/human/yaleBertoneTars.html
index 368d833..088ffd4 100644
--- src/hg/makeDb/trackDb/human/yaleBertoneTars.html
+++ src/hg/makeDb/trackDb/human/yaleBertoneTars.html
@@ -47,31 +47,31 @@
 <A HREF="https://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GSE1904"
 TARGET=_blank>GEO accession</A> for details of experimental protocols.</P>
 <P>
 The TARs identified for hg13 (NCBI Build 31) were mapped to this
 assembly using Blat.  The program pslCDnaFilter was used to filter 
 alignments using the parameters
 <TT>-minId=0.96</TT>,<TT> -minCover=0.25</TT>,
 <TT> -localNearBest=0.001</TT>,<TT>-minQSize=20</TT>,
 <TT> -minNonRepSize=16</TT>,<TT> -ignoreNs</TT>,<TT> -bestOverlap</TT>.</P>
 
 <H2>Display Conventions</H2>
 <P>
 TARs are represented by blocks in the graphical display. The numeric part of 
 the ID displayed when the track has pack or full visibility is the ID used
 by the Yale Database for Active Regions with Tools 
-(<A HREF="http://dart.gersteinlab.org/" TARGET=_blank>DART</A>). A link to 
+(<A HREF="http://papers.gersteinlab.org/papers/dart/" TARGET=_blank>DART</A>). A link to 
 this database is provided on the details page for each TAR.</P>
 
 <H2>Data Analysis</H2>
 <P>
 Two groups of TARs were identified: Normal and Poly(A)-associated.</P>
 
 <H3>Normal TARs:</H3> 
 <P>
 Clusters of transcription units were identified that consisted of at least 
 five consectutive probes with fluorescence intensities in the top 
 90th intensity percentile and with genomic coordinates within a 250-nt 
 window. After collecting these regions genome-wide, their locations were 
 compared to those of annotated components of genes. As a result, a
 total of 13,889 transcription units, ranging in size from 209 to 3,438 
 nucleotides, 
@@ -105,25 +105,25 @@
 In 94% (90/96) of cases, the PCR products were found to be of the expected 
 size in a single-pass assay.</P>
 
 <H2>Credits</H2>
 <P>
 These data were generated and analyzed by a collaboration between the labs of 
 Michael Snyder, 
 <A HREF="http://bioinfo.mbb.yale.edu/" TARGET=_blank>Mark Gerstein</A>, 
 and Sherman Weissman at Yale University and with 
 NASA Ames Research Center (Moffett Field, California) and Eloret Corporation 
 (Sunnyvale, California).</P>
 
 <H2>References</H2>
 <P>
 Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S <em>et al</em>.
-<A HREF="http://science.sciencemag.org/content/306/5705/2242"
+<A HREF="https://science.sciencemag.org/content/306/5705/2242"
 TARGET=_blank>Global identification of human transcribed sequences with 
 genome tiling arrays</A>. 
 <em>Science</em>. 2004 Dec 24;306(5705):2242-6.</P>
 <P>
 Stolc V, Gauhar Z, Mason C, Halasz G, van Batenburg MF, Rifkin SA, Hua S, 
 Herreman T, Tongprasit W, Barbano PE <em>et al</em>. 
-<A HREF="http://science.sciencemag.org/content/306/5696/655" 
+<A HREF="https://science.sciencemag.org/content/306/5696/655" 
 TARGET=_blank>A gene expression map for the euchromatic genome of <em>Drosophilamelanogaster</em></A>.
 <em>Science</em>. 2004 Oct 22;306(5696):655-60.</P>