8ed97d60a4f30d6692c054faee2ead5499c2e85e
ccpowell
  Mon Jul 1 09:36:34 2019 -0700
Adding newarch & images for dgvGold track release, refs #23371

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     </div>
     <div class="col-sm-3">
       <ul>
         <li><a href="#2004">2004 News</a></li>
         <li><a href="#2003">2003 News</a></li>
         <li><a href="#2002">2002 News</a></li>
         <li><a href="#2001">2001 News</a></li>
       </ul>
     </div>
   </div>
 </div>
 
 <!-- ============= 2019 archived news ============= -->
 <a name="2019"></a>
 
+<a name="070119"></a>
+<h2>Jul. 1, 2019 &nsbp;nsbp New DGV Gold Standard track for human (GRCh19/hg19)</h2>
+<p>
+We are pleased to announce the DGV Gold Standard track for human (GRCh19/hg19). This track displays
+copy number variants (CNVs), insertions/deletions (InDels), inversions and inversion breakpoints
+annotated by the <a href="http://dgv.tcag.ca/dgv/app/home" target="_blank">Database of Genomic Variants</a>
+(DGV). The initial criteria for the Gold Standard set require that a variant is found in at least
+two different studies and found in at least two different samples. After filtering out low-quality
+variants, the remaining variants are clustered according to 50% minimum overlap, and then merged
+into a single record. Gains and losses are merged separately.
+</p>
+
+<p>
+The <a href="https://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=dgvPlus" target="_blank">DGV Gold Standard track</a>
+utilizes a boxplot-like display to represent the merging of records. The highest ranking variant in
+the cluster defines the inner &quot;box&quot;, while the outer lines define the outermost start and stop
+coordinates of the CNV. In this way, the inner box forms a high-confidence CNV location and the
+thin connecting lines indicate confidence intervals for the location of CNV.
+</p>
+<p class="text-center">
+  <img class='text-center' src="../images/dgvGold-1.png" width='699' alt="DGV Gold Standard track">
+</p>
+
+<p>
+We would like to thank Jeff MacDonald and the <a href="http://dgv.tcag.ca/dgv/app/home" target="_blank">Database of Genomic Variants</a>
+group for providing guidance and these data. We would also like to thank Christopher Lee and Conner
+Powell as well as the entire UCSC Genome Browser team for creating and releasing this track.
+</p>
+
 <a name="062819"></a>
 <h2>Jun. 28, 2019 &nbsp;&nbsp; New Genome Browsers: Cow, bosTau9 (<em>Bos taurus</em>) and 
 Baboon, papAnu4 (<em>Papio anubis</em>)</h2>
 <p>
 Genome browsers are now available for the <em>Bos taurus</em> assembly released in Apr. 2018 by the
 <a href="https://www.ars.usda.gov/" target="_blank"> USDA Agricultural Research Service</a> (ARS-UCD1.2), 
 and the <em>Papio anubis</em> assembly released in Apr. 2017 by the
 <a href="https://www.hgsc.bcm.edu/" target="_blank"> Human Genome Sequencing Center</a> (Panu_3.0).
 <h3>About the assembly (bosTau9):</h3>
 <ul>
   <li><b>UCSC Genome Browser assembly ID:</b>  <a href="../../cgi-bin/hgGateway?db=bosTau9" 
   target="_blank">bosTau9</a></li>
   <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.ars.usda.gov/">
 USDA Agricultural Research Service</a></li>
   <li><b>Assembly date:</b> Apr. 2018</li>