925def6fd2f26c4bdd94f2dd325edb4fb455be52
hiram
  Wed Jun 26 09:50:40 2019 -0700
adding redmine23733 bugReport test refs #23733

diff --git src/hg/hubApi/tests/makefile src/hg/hubApi/tests/makefile
index 1feaa14..4600f71 100644
--- src/hg/hubApi/tests/makefile
+++ src/hg/hubApi/tests/makefile
@@ -1,45 +1,47 @@
 
 test:: test0 test6 test7 test8 test9 test10  \
 	test11 test12 test13 test14 test15 test16 test19 test21 \
 	test26 test27 test28 test29 test39 test40 \
 	listFunctions getFunctions getSequence wigData errorTests \
-	notSupported
+	notSupported bugReports
 
 all:: listFunctions getFunctions getSequence wigData errorTests \
 	notSupported
 
 listFunctions: list01 list02 list03 list04 list05 list06 list07 list08 list09 \
 	list10 list11 list12 list13 list14 list15
 
 getFunctions: test6 test7 test8 test9 test10 test11 test12 test13 test14 \
 	test15 test16 test19 test21 test26 test27 test28 \
 	test29 test39 test40
 
 getSequence: getSeq01 getSeq02 getSeq03
 
 wigData: wig01 wig02 wig03 wig04 wig05 wig06 wig07 wig08 wig09 wig10 \
 	wig11 wig12 wig13 wig14 wig15 wig16 wig17 wig18 wig19 wig20 \
 	wig21 wig22 wig23 wig24
 
 errorTests: err01 err02 err03 err04 err05 err06 err07 err08 err09 err10 \
 	err11 err12 err13 err14 err15 err16 err17 err18 err19 err20 \
 	err21 err22 err23 err24 err25 err26 err27 err28 err29 err30 \
 	err31 err32 err33 err34 err35 err36 err37 err38 err39
 
 notSupported: notSup01 notSup02
 
+bugReports: redmine23733
+
 setOutput:
 	@if [ ! -d testOutput ]; then mkdir testOutput; fi
 
 clean::
 	rm -f testOutput/*.gz
 	rmdir testOutput
 
 # exclude these lines from the JSON output for comparison with expected
 excludeLines = downloadTime|dataTime
 
 # testing /list/noSubCommand, /list/publicHubs and /list/ucscGenomes
 test0: setOutput
 	@./jsonConsumer.pl -test0 2>&1 | sed -e 's#https://.*/list#/list#;' | egrep -v "${excludeLines}" | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 	@echo '### test0: ./jsonConsumer.pl -test0 - OK'
@@ -477,38 +479,38 @@
 
 # testing extraneous parameters on functions
 err35: setOutput
 	@printf "### $@ 'https://hgwdev-api.gi.ucsc.edu/getData/sequence?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=araTha1;trackLeavesOnly=1;chrom=chr1;start=4567;end=8901;trackLeavesOnly'\n"
 	@./jsonConsumer.pl -endpoint="/getData/sequence" -hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt -genome=araTha1 -trackLeavesOnly -chrom=chr1 -start=4567 -end=8901 -trackLeavesOnly 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/getData#/getData#;' | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 # testing extraneous parameters on functions
 err36: setOutput
 	@printf "### $@ 'https://hgwdev-api.gi.ucsc.edu/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=araTha1;trackLeavesOnly=1;chrom=chr1;start=4567;end=8901;trackLeavesOnly;track=assembly;maxItemsOutput=5;jsonOutputArrays=1;trackLeavesOnly=1'\n"
 	@./jsonConsumer.pl -endpoint="/getData/track" -hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt -genome=araTha1 -trackLeavesOnly -chrom=chr1 -start=4567 -end=8901 -trackLeavesOnly -track=assembly -maxItemsOutput=5 -jsonOutputArrays -trackLeavesOnly 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/getData#/getData#;' | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 # testing duplicated parameters on functions
 err37: setOutput
-	@printf "### $@ 'https://hgwdev-api.gi.ucsc.edu/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=araTha1;chrom=chr1;start=4567;end=8901;track=assembly;maxItemsOutput=5;jsonOutputArrays=1;maxItemsOutput=0'\n"
-	@htmlCheck getAll 'https://hgwdev-api.gi.ucsc.edu/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=araTha1;chrom=chr1;start=4567;end=8901;track=assembly;maxItemsOutput=5;jsonOutputArrays=1;maxItemsOutput=0' 2>&1 | sed -e 's/, /,\n/g;' | egrep -v "${excludeLines}" | tail -5 | gzip -c > testOutput/$@.gz
+	@printf "### $@ 'https://api-test.gi.ucsc.edu/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=araTha1;chrom=chr1;start=4567;end=8901;track=assembly;maxItemsOutput=5;jsonOutputArrays=1;maxItemsOutput=0'\n"
+	@htmlCheck getAll 'https://api-test.gi.ucsc.edu/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=araTha1;chrom=chr1;start=4567;end=8901;track=assembly;maxItemsOutput=5;jsonOutputArrays=1;maxItemsOutput=0' 2>&1 | sed -e 's/, /,\n/g;' | egrep -v "${excludeLines}" | tail -5 | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 # testing illegal values on parameters
 err38: setOutput
-	@printf "### $@ 'https://hgwdev-api.gi.ucsc.edu/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=araTha1;chrom=chr1;start=4567;end=8901;track=assembly;maxItemsOutput=5;jsonOutputArrays=xyz'\n"
-	@htmlCheck getAll 'https://hgwdev-api.gi.ucsc.edu/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=araTha1;chrom=chr1;start=4567;end=8901;track=assembly;maxItemsOutput=5;jsonOutputArrays=xyz' 2>&1 | sed -e 's/, /,\n/g;' | egrep -v "${excludeLines}" | tail -5 | gzip -c > testOutput/$@.gz
+	@printf "### $@ 'https://api-test.gi.ucsc.edu/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=araTha1;chrom=chr1;start=4567;end=8901;track=assembly;maxItemsOutput=5;jsonOutputArrays=xyz'\n"
+	@htmlCheck getAll 'https://api-test.gi.ucsc.edu/getData/track?hubUrl=http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt;genome=araTha1;chrom=chr1;start=4567;end=8901;track=assembly;maxItemsOutput=5;jsonOutputArrays=xyz' 2>&1 | sed -e 's/, /,\n/g;' | egrep -v "${excludeLines}" | tail -5 | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 # testing protected track data
 err39: setOutput
 	@printf "### $@ 'https://hgwdev-hiram.gi.ucsc.edu/cgi-bin/hubApi/getData/track?track=cosmicRegions;genome=hg19;jsonOutputArrays=1;maxItemsOutput=5'\n"
 	@./jsonConsumer.pl -endpoint="/getData/track" -genome=hg19 -track=cosmicRegions -maxItemsOutput=5 -jsonOutputArrays 2>&1 | sed -e 's/, /,\n/g;' | egrep -v "${excludeLines}" | tail -5 | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 #####################  wiggle data ###########################################
 # classic wiggle with wig table and wib file
 wig01: setOutput
 	@printf "### $@ 'https://api-test.gi.ucsc.edu/getData/track?track=gc5Base;genome=ce4;maxItemsOutput=5'\n"
 	@./jsonConsumer.pl -endpoint="/getData/track" -genome=ce4 -track=gc5Base -maxItemsOutput=5 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/getData#/getData#;' | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
@@ -661,15 +663,19 @@
 	@printf "### $@ 'https://hgwdev-hiram.gi.ucsc.edu/cgi-bin/hubApi/getData/track?track=variants;chrom=chr1;genome=danRer11;hubUrl=http://research.nhgri.nih.gov/manuscripts/Burgess/zebrafish/downloads/NHGRI-1/hub.txt;jsonOutputArrays=1;maxItemsOutput=5'\n"
 	@./jsonConsumer.pl -endpoint="/getData/track" -hubUrl="http://research.nhgri.nih.gov/manuscripts/Burgess/zebrafish/downloads/NHGRI-1/hub.txt" -genome="danRer11" -track="variants" -chrom="chr1" -jsonOutputArrays -maxItemsOutput=5 2>&1 | egrep -v "${excludeLines}" | sed -e 's#https://.*/getData#/getData#;' | gzip -c > testOutput/$@.gz
 	@zdiff expected/$@.gz testOutput/$@.gz
 
 
 #     34 bam - not supported</li>
 #      2 bigBarChart - not supported</li>
 #      3 bigInteract - not supported</li>
 #     18 bigMaf - not supported</li>
 #    152 composite container - not supported</li>
 #     93 composite view - not supported</li>
 #     37 halSnake - not supported</li>
 #     31 superTrack child - not supported</li>
 #      5 vcfTabix - not supported</li>
 
+redmine23733: setOutput
+	@printf "### $@ 'https://api-test.gi.ucsc.edu/getData/track?track=knownGene;genome=hg38;chrom=chr1;end=48000;start=47000'\n"
+	@./jsonConsumer.pl -endpoint="/getData/track" -genome=hg38 -track=knownGene -chrom=chr1 -start=47000 -end=48000 2>&1 | sed -e 's/, /,\n/g;' | egrep -v "${excludeLines}" | tail -5 | gzip -c > testOutput/$@.gz
+	@zdiff expected/$@.gz testOutput/$@.gz