566131c5c4d7ab0b68dc6fdf63361e727e90cab2
hiram
  Sat Jun 29 17:26:59 2019 -0700
Added regenRn0 - Regeneron rat refs #21579

diff --git src/hg/makeDb/genbank/etc/genbank.conf src/hg/makeDb/genbank/etc/genbank.conf
index 3b35d5f..2bc63d0 100644
--- src/hg/makeDb/genbank/etc/genbank.conf
+++ src/hg/makeDb/genbank/etc/genbank.conf
@@ -664,30 +664,48 @@
 rn5.lift = /hive/data/genomes/rn5/jkStuff/rn5.nonBridged.lift
 rn5.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
 rn5.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
 rn5.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
 rn5.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
 rn5.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
 rn5.downloadDir = rn5
 rn5.refseq.mrna.xeno.load  = yes
 rn5.refseq.mrna.xeno.loadDesc = yes
 rn5.genbank.mrna.xeno.load  = yes
 rn5.perChromTables = no
 rn5.mgc = yes
 rn5.upstreamGeneTbl = ensGene
 rn5.upstreamMaf = multiz13way /hive/data/genomes/rn5/bed/multiz13way/species.list.txt
 
+# regenRn0 (Regeneron rat assembly)
+regenRn0.serverGenome = /hive/data/genomes/regenRn0/regenRn0.2bit
+regenRn0.ooc = /hive/data/genomes/regenRn0/jkStuff/regenRn0.11.ooc
+regenRn0.lift = /hive/data/genomes/regenRn0/jkStuff/nonBridged.lift
+regenRn0.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
+regenRn0.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
+regenRn0.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
+regenRn0.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
+regenRn0.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
+regenRn0.downloadDir = regenRn0
+regenRn0.refseq.mrna.xeno.load  = yes
+regenRn0.refseq.mrna.xeno.loadDesc = yes
+regenRn0.genbank.mrna.xeno.load  = yes
+regenRn0.perChromTables = no
+regenRn0.mgc = yes
+# regenRn0.upstreamGeneTbl = ensGene
+# regenRn0.upstreamMaf = multiz13way /hive/data/genomes/regenRn0/bed/multiz13way/species.list.txt
+
 # rn6 (rat)
 rn6.serverGenome = /hive/data/genomes/rn6/rn6.2bit
 rn6.ooc = /hive/data/genomes/rn6/jkStuff/rn6.11.ooc
 rn6.lift = /hive/data/genomes/rn6/jkStuff/rn6.nonBridged.lift
 rn6.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
 rn6.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
 rn6.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
 rn6.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
 rn6.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
 rn6.downloadDir = rn6
 rn6.refseq.mrna.xeno.load  = yes
 rn6.refseq.mrna.xeno.loadDesc = yes
 rn6.genbank.mrna.xeno.load  = yes
 rn6.perChromTables = no
 rn6.mgc = yes