767e072c615e69362eb94a7497cce35c3a8fbbc1 lrnassar Tue Jun 25 13:07:32 2019 -0700 Releasing JSON API #18869 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 360fa8e..2f3236e 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,30 +39,58 @@ </div> <div class="col-sm-3"> <ul> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> +<a name="062519"></a> +<h2> Jun. 25, 2019 JSON API now available</h2> + +<p> +The UCSC Genome Browser is pleased to announce its new <a href="help/api.html" +target="_blank">JSON API</a>. The API provides direct access to different +data including annotations and sequence data for both native Genome Browser assemblies as +well as hubs.</p> + +<p> +Some functions possible with the API include: +<ul> + <li>List of all available UCSC Genome Browser assemblies</li> + <li>List of chromosomes contained in a UCSC Genome Browser assembly or assembly hub</li> + <li>List of all data tracks in a specific assembly</li> + <li>Extraction of any track data from a UCSC Genome Browser assembly or hub</li> +</ul></p> + +<p> +See our <a href="help/api.html#Return" target="_blank">help page</a> for +a complete list of what data can be accessed, as well as as +<a href="help/api.html#list_examples" +target="_blank">examples of how to access the data</a>.</p> + +<p> +The UCSC Genome Browser would like to thank Hiram Clawson and Lou Nassar for the development and +testing of this new feature.</p> + <a name="062019"></a> <h2> Jun. 20, 2019 New GDC Cancer variants track and lollipop display for human (GRCh38/hg38)</h2> <p> We are pleased to announce the <a href="../cgi-bin/hgTrackUi?db=hg38&position=chr1%3A11102837-11267747&g=gdcCancer" target="_blank"> GDC Cancer mutations</a> track for human (<em>GRCh38/hg38</em>). This track shows the genomic positions of somatic variants found through whole genome sequencing of tumors as part of <a href="https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga" target="_blank">The Cancer Genome Atlas (TCGA)</a> by the National Cancer Institute, made available through the <a href="https://portal.gdc.cancer.gov/" taret="_blank">Genomic Data Commons Portal</a>. The data shown is sometimes called the "Pan-Cancer dataset", a collection of thirty-three TCGA projects processed in a uniform way. </p>