c4b68ccd0ffbb9122db69d03de0ee94dc19daaac
lrnassar
  Wed Jun 26 14:13:08 2019 -0700
Adding new assembly papAnu4 and bosTau9 to newsArch page #20769

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     </div>
     <div class="col-sm-3">
       <ul>
         <li><a href="#2004">2004 News</a></li>
         <li><a href="#2003">2003 News</a></li>
         <li><a href="#2002">2002 News</a></li>
         <li><a href="#2001">2001 News</a></li>
       </ul>
     </div>
   </div>
 </div>
 
 <!-- ============= 2019 archived news ============= -->
 <a name="2019"></a>
 
+<a name="062819"></a>
+<h2>Jun. 28, 2019 &nbsp;&nbsp; New Genome Browsers: Cow, bosTau9 (<em>Bos taurus</em>) and 
+Baboon, papAnu4 (<em>Papio anubis</em>)</h2>
+<p>
+Genome browsers are now available for the <em>Bos taurus</em> assembly released in Apr. 2018 by the
+<a href="https://www.ars.usda.gov/" target="_blank"> USDA Agricultural Research Service</a> (ARS-UCD1.2), 
+and the <em>Papio anubis</em> assembly released in Apr. 2017 by the
+<a href="https://www.hgsc.bcm.edu/" target="_blank"> Human Genome Sequencing Center</a> (Panu_3.0).
+<h3>About the assembly (bosTau9):</h3>
+<ul>
+  <li><b>UCSC Genome Browser assembly ID:</b>  <a href="../../cgi-bin/hgGateway?db=bosTau9" 
+  target="_blank">bosTau9</a></li>
+  <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.ars.usda.gov/">
+USDA Agricultural Research Service</a></li>
+  <li><b>Assembly date:</b> Apr. 2018</li>
+  <li><B>Accession ID:</B> GCF_002263795.1</li>
+  <li><B>NCBI Genome ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/genome/82"
+TARGET="_blank">82</A> (<em>Bos taurus</em>)</li>
+  <li><B>NCBI Assembly ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/assembly/1677391"
+TARGET="_blank">1677391</A></li>
+  <li><B>NCBI BioProject ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/bioproject/391427"
+TARGET="_blank">391427</A></li>
+  <li><B>NCBI BioSample ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/biosample/SAMN03145444"
+TARGET="_blank">SAMN03145444</A></li>
+  <li><b>Scaffold count: </b>2,211</li>
+  <li><b>Total size: </b>2,358,151,106</li>
+  <li><a href="../goldenPath/credits.html#Cow_credits" 
+target="_blank" >Acknowledgments</a></li>
+</ul>
+<h3>About the assembly (papAnu4):</h3>
+<ul>
+  <li><b>UCSC Genome Browser assembly ID:</b>  <a href="../../cgi-bin/hgGateway?db=papAnu4" 
+  target="_blank">papAnu4</a></li>
+  <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.hgsc.bcm.edu/">
+Human Genome Sequencing Center</a></li>
+  <li><b>Assembly date:</b> Apr. 2017</li>
+  <li><B>Accession ID:</B> GCF_000264685.3</li>
+  <li><B>NCBI Genome ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/genome/394"
+TARGET="_blank">394</A> (<em>Papio anubis</em>)</li>
+  <li><B>NCBI Assembly ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/assembly/1082401"
+TARGET="_blank">1082401</A></li>
+  <li><B>NCBI BioProject ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/bioproject/54005"
+TARGET="_blank">54005</A></li>
+  <li><B>NCBI BioSample ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/biosample/SAMN02981400"
+TARGET="_blank">SAMN02981400</A></li>
+  <li><b>Scaffold count: </b>71,135</li>
+  <li><b>Total size: </b>2,959,373,024</li>
+  <li><a href="../goldenPath/credits.html#Baboon_credits" 
+target="_blank" >Acknowledgments</a></li>
+</ul>
+<h3>Data and Downloads:</h3>
+<ul>
+  <li><a href="../goldenPath/credits.html" 
+target="_blank" >Data use conditions and restrictions</a></li>
+  <li><a href="../goldenPath/help/ftp.html" 
+target="_blank" >Rsync</a></li>
+  <li>FTP: <a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/bosTau9/" 
+target="_blank" >Cow</a> and 
+<a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/papAnu4/" 
+target="_blank" >Baboon</a></li>
+  <li>Downloads page: <a href="http://hgdownload.soe.ucsc.edu/downloads.html#cow"
+target="_blank" >Cow</a> and 
+<a href="http://hgdownload.soe.ucsc.edu/downloads.html#baboon"
+target="_blank" >Baboon</li>
+</ul>
+</p>
+
 <a name="062519"></a>
 <h2> Jun. 25, 2019 &nbsp;&nbsp; JSON API now available</h2>
-
 <p>
 The UCSC Genome Browser is pleased to announce its new <a href="help/api.html" 
 target="_blank">JavaScript Object Notation (JSON) Application Programming 
 Interface (API)</a>. The API provides direct access to different 
 data including annotations and sequence data for both native Genome Browser assemblies as 
 well as hubs.</p>
 
 <p>
 Some functions possible with the API include:
 <ul>
   <li>List of all available UCSC Genome Browser assemblies</li>
   <li>List of chromosomes contained in a UCSC Genome Browser assembly or assembly hub</li>
   <li>List of all data tracks in a specific assembly</li>
   <li>Extraction of any track data from a UCSC Genome Browser assembly or hub</li>
 </ul></p>