22f0c874d90f86f1bfa4014ee29f9c0ee0bff517
markd
  Tue Jun 25 23:17:29 2019 -0700
load transMap V5

diff --git src/hg/makeDb/doc/transMapTracks.txt src/hg/makeDb/doc/transMapTracks.txt
index 2499dd7..253be75 100644
--- src/hg/makeDb/doc/transMapTracks.txt
+++ src/hg/makeDb/doc/transMapTracks.txt
@@ -100,39 +100,32 @@
 ##############################################################################################
 # TransMap V5 tracks (2019-06-10 markd)
 ##
   - Build code is here:
        /cluster/home/markd/compbio/repos/git/transMap.git
     which also requires
       /cluster/home/markd/compbio/repos/git/pycbio.git
       git@github.com:diekhans/pipettor.git
 
   - Build process:
     # IMPORTANT: SET VERSION IN transMap-dev/etc/transMapBuildConf.py
     tmdir=~/compbio/projs/transMap/transMap-dev
     mkdir -p  /hive/data/inside/transMap/V5/logs
     pushd /hive/data/inside/transMap/V5
     (time nice ${tmdir}/bin/luigiTransMap --workers=64 --logConfFile=${tmdir}/etc/logging.conf ${tmdir}/etc/transMapBuildConf.py) >&logs/2019-06-24.log &
-    # takes maybe 10-14 hours,  at the end, check for parasol jobs
+    # takes maybe a day or more,  at the end, check for parasol jobs
     # that are lost (using one or two stranglers for a few batches), then do
     para stop -batch=/the/batch/name
     para push -batch=/the/batch/name
     # now wait for luigiTransMap to complete.  Must manually check log, as
     # current luigi doesn't exit non-zero if there were errors
 
   # create symlinks to /gbdb for bigPsl files
     ${tmdir}/bin/linkToGbdb  ${tmdir}/etc/transMapBuildConf.py
 
   # add trackDb entries at top level by editing:
     src/hg/makeDb/trackDb/trackDb.transMap.ra 
   # create push lists for databases and gbdb files for genomes on hgwbeta:
     ${tmdir}/bin/mkPushList ${tmdir}/etc/transMapBuildConf.py db.push.lst gbdb.push.lst
 
-  # and creating the following html files:
-    transMapV5.html
-    transMapEnsemblV5.html
-    transMapEstV5.html
-    transMapRefseqV5.html
-    transMapRnaV5.html
-
 
 ##############################################################################################