22f0c874d90f86f1bfa4014ee29f9c0ee0bff517
markd
  Tue Jun 25 23:17:29 2019 -0700
load transMap V5

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-<H2>Description</H2>
-
-<P>
-These tracks contain cDNA and gene alignments produced by
-the <em>TransMap</em> cross-species alignment algorithm
-from other vertebrate species in the UCSC Genome Browser.
-For closer evolutionary distances, the alignments are created using
-syntenically filtered LASTZ or BLASTZ alignment chains, resulting
-in a prediction of the orthologous genes in $organism.  For more distant
-organisms, reciprocal best alignments are used.
-</P>
-
-<em>TransMap</em> maps genes and related annotations in one species to another
-using synteny-filtered pairwise genome alignments (chains and nets) to
-determine the most likely orthologs.  For example, for the mRNA TransMap track
-on the human assembly, more than 400,000 mRNAs from 25 vertebrate species were
-aligned at high stringency to the native assembly using BLAT.  The alignments
-were then mapped to the human assembly using the chain and net alignments
-produced using blastz, which has higher sensitivity than BLAT for diverged
-organisms.
-<P>
-Compared to translated BLAT, TransMap finds fewer paralogs and aligns more UTR
-bases.
-</P>
-<!--#insert file="transMapTailer.html"-->