c8cca307cadefdd6245ab8d1784478c95a717c88
kate
Tue Sep 11 18:30:02 2018 -0700
First steps toward multi-region link on details page. refs #21917
diff --git src/hg/hgc/interactClick.c src/hg/hgc/interactClick.c
index 01dd2ac..4ea46ec 100644
--- src/hg/hgc/interactClick.c
+++ src/hg/hgc/interactClick.c
@@ -1,24 +1,25 @@
/* Details page for interact type tracks */
/* Copyright (C) 2018 The Regents of the University of California
* See README in this or parent directory for licensing information. */
#include "common.h"
#include "obscure.h"
#include "hdb.h"
#include "hgc.h"
+#include "trashDir.h"
#include "interact.h"
#include "interactUi.h"
static struct interact *getInteractsFromTable(struct trackDb *tdb, char *chrom, int start, int end,
char *foot)
/* Retrieve interact items at this position from track table */
{
struct sqlConnection *conn = NULL;
struct customTrack *ct = lookupCt(tdb->track);
char *table;
if (ct != NULL)
{
conn = hAllocConn(CUSTOM_TRASH);
table = ct->dbTableName;
@@ -151,30 +152,50 @@
sprintLongWithCommas(endBuf, region2End);
sprintLongWithCommas(sizeBuf, region2End - region2Start);
printf("%s region: %s "
"%s:%s-%s %s",
region2Label, region2Name, region2Chrom, region2Start+1, region2End,
region2Chrom, startBuf, endBuf, inter->targetStrand[0] == '.' ? "" : inter->targetStrand);
printf(" %s bp
\n", sizeBuf);
int distance = interactRegionDistance(inter);
if (distance > 0)
{
// same chrom
sprintLongWithCommas(sizeBuf, distance);
printf("Distance between midpoints: %s bp
\n", sizeBuf);
}
+// print link to multi-region view of ends
+
+// create bed file in trash directory with end coordinates
+struct tempName mrTn;
+trashDirFile(&mrTn, "hgt", "custRgn_interact", ".bed");
+FILE *f = fopen(mrTn.forCgi, "w");
+if (f == NULL)
+ errAbort("can't create temp file %s", mrTn.forCgi);
+fprintf(f, "%s\t%d\t%d\n"
+ "%s\t%d\t%d\n",
+ region1Chrom, region1Start, region1End,
+ region2Chrom, region2Start, region2End);
+fclose(f);
+printf("
Show both ends of interaction in multi-region browser view",
+ mrTn.forCgi);
+
#ifdef TODO /* TODO: get count and score stats of all interactions in window ?*/
double *scores;
AllocArray(scores, count);
#endif
}
void doInteractItemDetails(struct trackDb *tdb, struct interact *inter, char *item, boolean isMultiple)
/* Details of interaction item */
{
if (!isEmptyTextField(inter->name))
printf("Interaction name: %s
\n", inter->name);
printf("Score: %d
\n", inter->score);
printf("Value: %0.3f
\n", inter->value);
@@ -200,18 +221,19 @@
if (count > 1)
{
printf("Interactions at this position: %d
", count); doInteractRegionDetails(tdb, inters); printf("
"); } genericHeader(tdb, item); for (inter = inters; inter; inter = inter->next) { if (count > 1) printf("