c8cca307cadefdd6245ab8d1784478c95a717c88 kate Tue Sep 11 18:30:02 2018 -0700 First steps toward multi-region link on details page. refs #21917 diff --git src/hg/hgc/interactClick.c src/hg/hgc/interactClick.c index 01dd2ac..4ea46ec 100644 --- src/hg/hgc/interactClick.c +++ src/hg/hgc/interactClick.c @@ -1,24 +1,25 @@ /* Details page for interact type tracks */ /* Copyright (C) 2018 The Regents of the University of California * See README in this or parent directory for licensing information. */ #include "common.h" #include "obscure.h" #include "hdb.h" #include "hgc.h" +#include "trashDir.h" #include "interact.h" #include "interactUi.h" static struct interact *getInteractsFromTable(struct trackDb *tdb, char *chrom, int start, int end, char *foot) /* Retrieve interact items at this position from track table */ { struct sqlConnection *conn = NULL; struct customTrack *ct = lookupCt(tdb->track); char *table; if (ct != NULL) { conn = hAllocConn(CUSTOM_TRASH); table = ct->dbTableName; @@ -151,30 +152,50 @@ sprintLongWithCommas(endBuf, region2End); sprintLongWithCommas(sizeBuf, region2End - region2Start); printf("<b>%s region:</b> %s " "<a href='hgTracks?position=%s:%d-%d' target='_blank'>%s:%s-%s</a> %s", region2Label, region2Name, region2Chrom, region2Start+1, region2End, region2Chrom, startBuf, endBuf, inter->targetStrand[0] == '.' ? "" : inter->targetStrand); printf(" %s bp<br>\n", sizeBuf); int distance = interactRegionDistance(inter); if (distance > 0) { // same chrom sprintLongWithCommas(sizeBuf, distance); printf("<b>Distance between midpoints:</b> %s bp<br>\n", sizeBuf); } +// print link to multi-region view of ends + +// create bed file in trash directory with end coordinates +struct tempName mrTn; +trashDirFile(&mrTn, "hgt", "custRgn_interact", ".bed"); +FILE *f = fopen(mrTn.forCgi, "w"); +if (f == NULL) + errAbort("can't create temp file %s", mrTn.forCgi); +fprintf(f, "%s\t%d\t%d\n" + "%s\t%d\t%d\n", + region1Chrom, region1Start, region1End, + region2Chrom, region2Start, region2End); +fclose(f); +printf("<br><a target='_blank' href='hgTracks?" + "virtMode=1" + "&virtModeType=customUrl" + "&multiRegionsBedUrl=%s'" + ">Show both ends of interaction in multi-region browser view</a>", + mrTn.forCgi); + #ifdef TODO /* TODO: get count and score stats of all interactions in window ?*/ double *scores; AllocArray(scores, count); #endif } void doInteractItemDetails(struct trackDb *tdb, struct interact *inter, char *item, boolean isMultiple) /* Details of interaction item */ { if (!isEmptyTextField(inter->name)) printf("<b>Interaction name:</b> %s<br>\n", inter->name); printf("<b>Score:</b> %d<br>\n", inter->score); printf("<b>Value:</b> %0.3f<br>\n", inter->value); @@ -200,18 +221,19 @@ if (count > 1) { printf("<b>Interactions at this position:</b> %d<p>", count); doInteractRegionDetails(tdb, inters); printf("</p>"); } genericHeader(tdb, item); for (inter = inters; inter; inter = inter->next) { if (count > 1) printf("<hr>\n"); doInteractItemDetails(tdb, inter, item, count > 1); if (count > 1 && !isEmptyTextField(inter->name) && sameString(inter->name, item)) printf("<hr>\n"); } + }