b84011815ab7d9c53d637875c56551bde573870b jnavarr5 Thu Jun 20 15:13:50 2019 -0700 Announcing the GDC Cancer track for hg38, refs #22742 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 9253a81..360fa8e 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,30 +39,64 @@
+ ++We are pleased to announce the + +GDC Cancer mutations track for human (GRCh38/hg38). This +track shows the genomic positions of somatic variants found through whole genome sequencing of +tumors as part of +The Cancer Genome Atlas (TCGA) by the National Cancer Institute, made available +through the Genomic Data Commons Portal. +The data shown is sometimes called the "Pan-Cancer dataset", a collection of +thirty-three TCGA projects processed in a uniform way. +
++With the release of the GDC Cancer track, we are introducing a new lollipop display mode, available +when this track is in 'full' or 'squish' mode. These variants can be shown in two display +modes: +
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+We would like to thank the Genomic Data +Commons Portal for making the TCGA data available on their web site. We would also like to thank +Brian Raney and Jairo Navarro at the UCSC Genome Browser for creating and testing this track and +the new lollipop display mode.
+We are pleased to announce two new ENCODE 3 transcription factor binding site track sets for human (GRCh37/hg19, GRCh38/hg38). These track sets show regions of transcription factor binding derived from a large collection of ChIP-seq experiments performed by the ENCODE project between February 2011 and November 2018.
The ENCODE TF ChIP-seq data were processed using the ENCODE Transcription Factor ChIP-seq Processing Pipeline to generate peaks of TF binding. Peaks from 1264 experiments (1256 in hg38) representing 338 transcription factors (340 in hg38) in