48d3221e1e9896b4d6b3b2aa969dc4906295699b
ccpowell
Fri Jul 19 11:40:28 2019 -0700
Updating description to mention YP & NP are mitochondrial, refs #23818
diff --git src/hg/makeDb/trackDb/refSeqComposite.html src/hg/makeDb/trackDb/refSeqComposite.html
index ec4c014..1c81ac2 100644
--- src/hg/makeDb/trackDb/refSeqComposite.html
+++ src/hg/makeDb/trackDb/refSeqComposite.html
@@ -21,44 +21,45 @@
This track is a multi-view composite track that contains differing data set views.
Instructions for configuring multi-view tracks are
here.
To show only a selected set of subtracks, uncheck the boxes next to the tracks that you wish to
hide.
The views available for this track include:
- RefSeq annotations and alignments
-
RefSeq All – all curated and predicted annotations provided by
RefSeq.
-
RefSeq Curated – subset of RefSeq All that includes only those
- annotations whose accessions begin with NM, NR, NP or YP. (YP annotations exist for human only)
+ annotations whose accessions begin with NM, NR, NP or YP. (NP and YP are used only for
+ protein-coding genes on the mitochondrion; YP is used for human only.)
-
RefSeq Predicted – subset of RefSeq All that includes those annotations whose
accessions begin with XM or XR.
-
RefSeq Other – all other annotations produced by the RefSeq group that
do not fit the requirements for inclusion in the RefSeq Curated or the
RefSeq Predicted tracks.
-
RefSeq Alignments – alignments of RefSeq RNAs to the $organism genome provided
by the RefSeq group.
-
RefSeq Diffs – alignment differences between the $organism reference genome(s)
- and RefSeq transcripts. Note: track not currently available for every assembly.
+ and RefSeq transcripts. (Track not currently available for every assembly.)
-
RefSeq HGMD – only show RefSeq Curated transcripts mentioned in the Human
Gene Mutation Database. This track is only available on the human genomes hg19 and hg38.
- UCSC annotations
-
UCSC RefSeq – annotations generated from UCSC's realignment of RNAs with NM
and NR accessions to the $organism genome. This track was previously known as the "RefSeq
Genes" track.