48d3221e1e9896b4d6b3b2aa969dc4906295699b ccpowell Fri Jul 19 11:40:28 2019 -0700 Updating description to mention YP & NP are mitochondrial, refs #23818 diff --git src/hg/makeDb/trackDb/refSeqComposite.html src/hg/makeDb/trackDb/refSeqComposite.html index ec4c014..1c81ac2 100644 --- src/hg/makeDb/trackDb/refSeqComposite.html +++ src/hg/makeDb/trackDb/refSeqComposite.html @@ -21,44 +21,45 @@ This track is a multi-view composite track that contains differing data set <em>views</em>. Instructions for configuring multi-view tracks are <a href="../goldenPath/help/multiView.html" target="_blank">here</a>. To show only a selected set of subtracks, uncheck the boxes next to the tracks that you wish to hide. </p> The views available for this track include: <dl> <dt><em><strong>RefSeq annotations and alignments</strong></em></dt> <ul> <li> <em>RefSeq All</em> – all curated and predicted annotations provided by RefSeq.</li> <li> <em>RefSeq Curated</em> – subset of <em>RefSeq All</em> that includes only those - annotations whose accessions begin with NM, NR, NP or YP. (YP annotations exist for human only)</li> + annotations whose accessions begin with NM, NR, NP or YP. <small>(NP and YP are used only for + protein-coding genes on the mitochondrion; YP is used for human only.)</small></li> <li> <em>RefSeq Predicted</em> – subset of RefSeq All that includes those annotations whose accessions begin with XM or XR.</li> <li> <em>RefSeq Other</em> – all other annotations produced by the RefSeq group that do not fit the requirements for inclusion in the <em>RefSeq Curated</em> or the <em>RefSeq Predicted</em> tracks.</li> <li> <em>RefSeq Alignments</em> – alignments of RefSeq RNAs to the $organism genome provided by the RefSeq group.</li> <li> <em>RefSeq Diffs</em> – alignment differences between the $organism reference genome(s) - and RefSeq transcripts. <b>Note</b>: track not currently available for every assembly. + and RefSeq transcripts. <small>(Track not currently available for every assembly.)</small> </li> <li> <em>RefSeq HGMD</em> – only show RefSeq Curated transcripts mentioned in the Human Gene Mutation Database. This track is only available on the human genomes hg19 and hg38. </li> </ul> </dl> <dl> <dt><em><strong>UCSC annotations</strong></em></dt> <ul> <li> <em>UCSC RefSeq</em> – annotations generated from UCSC's realignment of RNAs with NM and NR accessions to the $organism genome. This track was previously known as the "RefSeq Genes" track.</li>