d2da1341d245cf5a5d574e2f75375ef49091ad30
chmalee
  Tue Jul 16 13:18:35 2019 -0700
Rework of omim otto pipeline to accomadate new genemap schema, no refs

diff --git src/hg/lib/omimGeneMap2.as src/hg/lib/omimGeneMap2.as
new file mode 100644
index 0000000..b09de43
--- /dev/null
+++ src/hg/lib/omimGeneMap2.as
@@ -0,0 +1,15 @@
+table omimGeneMap2
+"This table contains the same data as the genemap2.txt file downloaded from OMIM"
+    (
+    string location; "Cyto Location"
+    string compCtyoLoc; "Computed Cyto Location"
+    int omimId; "Mim Number"
+    string geneSymbol; "Gene Symbol(s)"
+    lstring geneName; "Gene Name"
+    string approvedSymbol; "Approved Symbol"
+    string entrez; "Entrez Gene ID"
+    string ensGeneId; "Ensembl Gene ID"
+    lstring comments; "Comments"
+    lstring phenotypes; "Phenotypes"
+    lstring mmGeneId; "Mouse Gene Symbol/ID"
+    )