Commits for hiram

v385_preview2 to v385_base (2019-07-15 to 2019-07-22) v385

8c518d29a2dc04b3164a120f36a8d0c8d7bd6892 Thu Jul 18 13:18:47 2019 -0700

• allow hgwdev to be used as a cluster refs #23734
  • src/hg/utils/automation/HgAutomate.pm - lines changed 7, context: html, text, full: html, text

f81b7f500a81f07abeacdab89886d0c82cef19e0 Thu Jul 18 15:54:08 2019 -0700

• broken code to discover GAPS in sequence refs #23734
  • src/utils/findMotif/findMotif.c - lines changed 5, context: html, text, full: html, text

1c0cb9b18d0e449cbdae2c681d0a0abdcacd1e7e Fri Jul 19 10:34:46 2019 -0700

• add augustusSpecies argument rearrange masking fix allGaps refs #23734
  • src/hg/utils/automation/doAssemblyHub.pl - lines changed 56, context: html, text, full: html, text

b77c7579dafeb9bb2a070e5043ee34b87f7e151b Fri Jul 19 15:23:18 2019 -0700

• correct column definitions for tandemDups.bb tracks refs #23734
  • src/hg/lib/tandemDups.as - lines changed 18, context: html, text, full: html, text

b3833e993f98922e22e1278e632716e729ec54ad Fri Jul 19 15:24:34 2019 -0700

• adding gapOverlap and tandemDups tracks to the asmHub build refs #23734
  • src/hg/utils/automation/asmHubTanDups.pl - lines changed 155, context: html, text, full: html, text
  • src/hg/utils/automation/asmHubTrackDb.sh - lines changed 48, context: html, text, full: html, text
  • src/hg/utils/automation/doAssemblyHub.pl - lines changed 51, context: html, text, full: html, text

87bf7cb823cbfa92f36c972b1e4f805e97ab7e3e Mon Jul 22 10:01:43 2019 -0700

• correctly cleaning windowMasker refs #23734
  • src/hg/utils/automation/doAssemblyHub.pl - lines changed 1, context: html, text, full: html, text

d863ec7abd54b0c2a634bf71718cc1fbf1f795cc Mon Jul 22 10:04:20 2019 -0700

• v385 final build, refs #23806
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text

52148600588f39f123013614612c81257488fdc3 Mon Jul 22 10:04:50 2019 -0700

• New version number v385
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text
  • src/inc/srcVersion.h - lines changed 1, context: html, text, full: html, text