90aa101ee4f9e47a77b2eac496eca213a787d513
jcasper
Mon Jul 22 01:53:32 2019 -0700
Adding table browser support for hic tracks, refs #22316
diff --git src/hg/hgTables/schema.c src/hg/hgTables/schema.c
index 47065d3..977565e 100644
--- src/hg/hgTables/schema.c
+++ src/hg/hgTables/schema.c
@@ -635,60 +635,64 @@
static void showSchemaHub(char *db, char *table)
/* Show schema on a hub track. */
{
struct trackDb *tdb = hashMustFindVal(fullTableToTdbHash, table);
hubConnectAddDescription(db, tdb);
char *type = cloneFirstWord(tdb->type);
if (tdbIsBigBed(tdb))
showSchemaBigBed(table, tdb);
else if (sameString(type, "longTabix"))
showSchemaLongTabix(table, tdb);
else if (sameString(type, "bam"))
showSchemaBam(table, tdb);
else if (sameString(type, "vcfTabix"))
showSchemaVcf(table, tdb, TRUE);
+else if (sameString(type, "hic"))
+ showSchemaHic(table, tdb);
else
{
hPrintf("Binary file of type %s stored at %s
\n",
type, trackDbSetting(tdb, "bigDataUrl"));
printTrackHtml(tdb);
}
}
static void showSchemaWiki(struct trackDb *tdb, char *table)
/* Show schema for the wikiTrack. */
{
hPrintf("User annotations to UCSC genes or genome regions
\n");
showSchemaDb(wikiDbName(), tdb, table);
printTrackHtml(tdb);
}
static void showSchema(char *db, struct trackDb *tdb, char *table)
/* Show schema to open html page. */
{
boolean isTabix = FALSE;
if (isHubTrack(table))
showSchemaHub(db, table);
else if (isBigBed(database, table, curTrack, ctLookupName))
showSchemaBigBed(table, tdb);
else if (isLongTabixTable(table))
showSchemaLongTabix(table, tdb);
else if (isBamTable(table))
showSchemaBam(table, tdb);
else if (isVcfTable(table, &isTabix))
showSchemaVcf(table, tdb, isTabix);
+else if (isHicTable(table))
+ showSchemaHic(table, tdb);
else if (isCustomTrack(table))
showSchemaCt(db, table);
else if (sameWord(table, WIKI_TRACK_TABLE))
showSchemaWiki(tdb, table);
else if (isBigWig(database, table, curTrack, ctLookupName) && !hTableExists(db, table))
showSchemaBigWigNoTable(db, table, tdb);
else
showSchemaDb(db, tdb, table);
}
void doTableSchema(char *db, char *table, struct sqlConnection *conn)
/* Show schema around table (which is not described by curTrack). */
{
struct trackDb *tdb = NULL;
char parseBuf[256];