672f36ce43c028f845007af230541ebf7f5d7c1a jnavarr5 Thu Jul 18 15:05:26 2019 -0700 Updating a broken GENCODE publications link, refs #23790 diff --git src/hg/makeDb/trackDb/wgEncodeGencodeCredits1.shared.html src/hg/makeDb/trackDb/wgEncodeGencodeCredits1.shared.html index 3f4e3a8..dfa9143 100644 --- src/hg/makeDb/trackDb/wgEncodeGencodeCredits1.shared.html +++ src/hg/makeDb/trackDb/wgEncodeGencodeCredits1.shared.html @@ -1,110 +1,110 @@ <h2>Credits</h2> <p> This GENCODE release is the result of a collaborative effort among the following laboratories: (contact: <A HREF="mailto:gencode@sanger.ac.uk"> GENCODE at the Sanger Institute</A>) <!-- above address is gencode at sanger.ac.uk --> </p> <table style="text-align: left; width: 100%;" border="1" cellpadding="2" cellspacing="2"> <tbody> <tr> <td style="vertical-align: top; text-align: left;"><b>Lab/Institution</b></td> <td style="vertical-align: top; text-align: left;"><b>Contributors</b></td> </tr> <tr> <td style="vertical-align: top; text-align: left;"><a href="https://www.ebi.ac.uk/about/people/paul-flicek" target="_blank">GENCODE Principal Investigator</a>, EMBL European Bioinformatics Institute, Cambridge, UK</td> <td style="vertical-align: top;">Paul Flicek</td> </tr> <tr> <td style="vertical-align: top; text-align: left;"><a href="http://www.sanger.ac.uk/people/directory/frankish-adam" target="_blank">GENCODE Co-Principal Investigator</a>, EMBL European Bioinformatics Institute, Cambridge, UK</td> <td style="vertical-align: top;">Adam Frankish</td> </tr> <tr> <td style="vertical-align: top; text-align: left;"><a href="https://www.researchgate.net/scientific-contributions/16169870_Bronwen_Aken" target="_blank">GENCODE Co-Principal Investigator</a>, Wellcome Trust Sanger Institute (WTSI), Cambridge, UK</td> <td style="vertical-align: top;">Bronwen Aken</td> </tr> <tr> <td style="vertical-align: top; text-align: left;"><a href="https://kclpure.kcl.ac.uk/portal/tim.hubbard.html" target="_blank">Kings College, London, UK</a></td> <td style="vertical-align: top;">Tim Hubbard</td> </tr> <tr> <td style="vertical-align: top; text-align: left;"><a href="http://www.sanger.ac.uk/science/groups/vertebrate-annotation" target="_blank">HAVANA manual annotation group</a>, EMBL European Bioinformatics Institute, Cambridge, UK</td> <td style="vertical-align: top;"> Timothy Cutts, Jyoti Choudhary, Ed Griffiths, Ewan Birney, Jose Manuel Gonzalez, Stephen Fitzgerald, Andrew Berry, Alexandra Bignell, Claire Davidson, Gloria Despacio-Reyes, Mike Kay, Deepa Manthravadi, Gaurab Mukherjee, Gemma Barson, Matt Hardy, Angela Macharia</td> </tr> <tr> <td style="vertical-align: top; text-align: left;"><a href="https://www.ebi.ac.uk/services/teams/ensembl" target="_blank">Ensembl</a>, EMBL European Bioinformatics Institute, Cambridge, UK</td> <td style="vertical-align: top;"> Carlos Garcia, Fergal Martin, Osagie Izuogu</td> </tr> <tr> <td style="vertical-align: top; text-align: left;"><a href="http://www.crg.eu/roderic_guigo" target="_blank">Centre de Regulació Genòmica (CRG)</a>, Barcelona, Spain</td> <td style="vertical-align: top;"> Roderic Guigó, Julien Lagarde, Barbara Uszczyńska</td> </tr> <tr> <td><a href="http://genome.ucsc.edu/" target="_blank">UC Santa Cruz Genomics Institute, University of California Santa Cruz</a> (UCSC), USA</td> <td style="vertical-align: top;">David Haussler, Mark Diekhans, Benedict Paten, Joel Armstrong, Ian Fiddes</td> </tr> <tr> <td><a href="https://www.csail.mit.edu/" target="_blank">Computer Science and Artificial Intelligence Lab</a>,<a href="https://www.broadinstitute.org/" target="_blank">Broad Institute of MIT and Harvard</a>, USA</td> <td style="vertical-align: top;">Manolis Kellis, Irwin Jungreis</td> </tr> <tr> <td><a href="http://medicine.yale.edu/bbs/computational/" target="_blank">Computational Biology and Bioinformatics, Yale University</a> (Yale), USA</td> <td>Mark Gerstein, Ekta Khurana, Cristina Sisu, Baikang Pei, Yan Zhang, Mihali Felipe</td> </tr> <tr> <td style="vertical-align: top; text-align: left;"><a href="http://www.unil.ch/cig/home.html" target="_blank">Center for Integrative Genomics</a>,University of Lausanne, Switzerland</td> <td style="vertical-align: top;">Alexandre Reymond, Cedric Howald, Anne-Maud Ferreira, Jacqueline Chrast</td> </tr> <tr> <td style="vertical-align: top; text-align: left;"><a href="https://www.cnio.es/ing/index.asp" target="_blank">Structural Computational Biology Group</a>, Centro Nacional de Investigaciones Oncologicas (CNIO), Madrid, Spain</td> <td style="vertical-align: top;">Alfonso Valencia, Michael Tress, José Manuel Rodríguez, Victor de la Torre</td> </tr> <tr> <td style="vertical-align: top; text-align: left;">Former members of the GENCODE project</td> <td style="vertical-align: top;"> Jennifer Harrow, James Gilbert, Electra Tapanari, Stephen Searle, Rachel Harte, Daniel Barrell, Felix Kokocinski, Veronika Boychenko, Toby Hunt, Catherine Snow, Gary Saunders, Sarah Grubb, Thomas Derrien, Andrea Tanzer, Gang Fang, Mihali Felipe, Joanne Howes, Reena Halai, Pablo Roman-Garcia, Michael Brent, Randall Brown, Jeltje van Baren </td> </tr> </tbody> </table> <h2>References</h2> <p> Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S <em>et al</em>. <a href="http://genome.cshlp.org/content/22/9/1760.long" target="_blank"> GENCODE: the reference human genome annotation for The ENCODE Project</a>. <em>Genome Res</em>. 2012 Sep;22(9):1760-74. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/22955987" target="_blank">22955987</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431492/" target="_blank">PMC3431492</a> </p> <p> Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D <em>et al</em>. <a href="https://genomebiology.biomedcentral.com/articles/10.1186/gb-2006-7-s1-s4" target="_blank"> GENCODE: producing a reference annotation for ENCODE</a>. <em>Genome Biol</em>. 2006;7 Suppl 1:S4.1-9. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/16925838" target="_blank">16925838</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1810553/" target="_blank">PMC1810553</a> </p> <p>A full list of GENCODE publications are available -at <a href="http://www.gencodegenes.org/publications.html" target="_blank">The GENCODE Project -web site</a>. +at <a href="https://www.gencodegenes.org/pages/publications.html" target="_blank">The GENCODE +Project web site</a>. </p> <h2>Data Release Policy</h2> <p>GENCODE data are available for use without restrictions.</p>