d5dbd5f29d2c2ccae42cd9f032eeb66d50df5336 lrnassar Mon Jul 15 15:31:20 2019 -0700 News announcement for V5 TransMap track #23729 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index e5cd71a..d9126c1 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,30 +39,56 @@ </div> <div class="col-sm-3"> <ul> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> +<a name="071519"></a> +<h2>Jul. 15, 2019 Updated TransMap tracks (V5)</h2> +<p> +We are pleased to announce the release of a new set of TransMap (V5) tracks for 94 different +assemblies.</p> + +<p> +The TransMap tracks are an attempt to map features, such as mRNAs, ESTs, and gene annotations +from one organism to another through pairwise, whole-genome alignments. These new TransMap tracks +are:</p> +<ul> + <li>Ensembl Mappings</li> + <li>RefSeq Gene Mappings</li> + <li>GenBank RNA Mappings</li> + <li>EST Mappings</li> +</ul> + +<p> +You can read more about how these tracks were created on the +<a href="../../cgi-bin/hgTrackUi?db=hg38&g=transMapV5" target="_blank">track description page</a> +for the hg38/GRCh38 version of these tracks. The TransMapV4 data can still be found in our +<a href="http://hgdownload.soe.ucsc.edu/gbdb/" target="_blank">download server</a>.</p> + +<p> +Thanks to Mark Diekhans and Lou Nassar for their work in creating and releasing these tracks.</p> + <a name="070919"></a> <h2>Jul. 9, 2019 Expanded CRISPR track released for human (hg19/GRCh37)</h2> <p> We are pleased to announce the release of an expanded <a href="../cgi-bin/hgTracks?db=hg19&hideTracks=1&knownGene=pack&crisprAllTargets=pack&position=chr7:116397500-116398000" target="_blank">CRISPR Targets track</a> for the human hg19/GRCh37 assembly. This track shows the DNA sequences targetable by CRISPR RNA guides using the Cas9 enzyme from S. pyogenes (PAM: NGG) over the entire human genome. CRISPR target sites were annotated with predicted specificity (off-target effects) and predicted efficiency (on-target cleavage) by various algorithms through the tool <a href="http://crispor.tefor.net/" target="_blank">CRISPOR</a>. </p> <p class="text-center"> <img class='text-center' src="../images/crisprAll.png" width='850' alt="CrisprAllTargets track"> </p> <p>