9c9bcde0ff7379019dcce66c23471c2848dc884b markd Wed Jul 17 19:18:37 2019 -0700 updated gencode biotypes and tags links due to site changes diff --git src/hg/hgc/gencodeClick.c src/hg/hgc/gencodeClick.c index a4d7305..95561c0 100644 --- src/hg/hgc/gencodeClick.c +++ src/hg/hgc/gencodeClick.c @@ -40,32 +40,32 @@ * files for every GENCODE version if a URL was added or changed. */ //FIXME: clean up RA files when CGIs no longer need them static char *ensemblTranscriptIdUrl = "http://www.ensembl.org/%s/Transcript/Summary?db=core;t=%s"; static char *ensemblGeneIdUrl = "http://www.ensembl.org/%s/Gene/Summary?db=core;t=%s"; static char *ensemblProteinIdUrl = "http://www.ensembl.org/%s/Transcript/ProteinSummary?db=core;t=%s"; static char *ensemblSupportingEvidUrl = "http://www.ensembl.org/%s/Transcript/SupportingEvidence?db=core;t=%s"; static char *ensemblH37TranscriptIdUrl = "http://grch37.ensembl.org/%s/Transcript/Summary?db=core;t=%s"; static char *ensemblH37GeneIdUrl = "http://grch37.ensembl.org/%s/Gene/Summary?db=core;t=%s"; static char *ensemblH37ProteinIdUrl = "http://grch37.ensembl.org/%s/Transcript/ProteinSummary?db=core;t=%s"; static char *ensemblH37SupportingEvidUrl = "http://grch37.ensembl.org/%s/Transcript/SupportingEvidence?db=core;t=%s"; static char *vegaTranscriptIdUrl = "http://vega.sanger.ac.uk/%s/Transcript/Summary?db=core;t=%s"; static char *vegaGeneIdUrl = "http://vega.sanger.ac.uk/%s/Gene/Summary?db=core;g=%s"; -static char *gencodeBiotypesUrl = "http://www.gencodegenes.org/gencode_biotypes.html"; -static char *gencodeTagsUrl = "http://www.gencodegenes.org/gencode_tags.html"; +static char *gencodeBiotypesUrl = "http://www.gencodegenes.org/pages/biotypes.html"; +static char *gencodeTagsUrl = "http://www.gencodegenes.org/pages/tags.html"; static char *yalePseudoUrl = "http://tables.pseudogene.org/%s"; static char *hgncUrl = " https://www.genenames.org/data/gene-symbol-report/#!/symbol/%s"; static char *geneCardsUrl = "http://www.genecards.org/cgi-bin/carddisp.pl?gene=%s"; static char *apprisHomeUrl = "http://appris-tools.org/"; static char *apprisGeneUrl = "http://appris-tools.org/#/database/id/%s/%s?sc=ensembl"; static char *getBaseAcc(char *acc, char *accBuf, int accBufSize) /* get the accession with version number dropped. */ { safecpy(accBuf, accBufSize, acc); char *dot = strchr(accBuf, '.'); if (dot != NULL) *dot = '\0'; return accBuf;