438d43910f377e7abe8b81cb9b04acaadaca1b6d markd Thu Jul 18 13:04:33 2019 -0700 indicated that GENCODE gene/transcript status columns are obsolete diff --git src/hg/lib/encode/wgEncodeGencodeAttrs.as src/hg/lib/encode/wgEncodeGencodeAttrs.as index e3b6fba..0186796 100644 --- src/hg/lib/encode/wgEncodeGencodeAttrs.as +++ src/hg/lib/encode/wgEncodeGencodeAttrs.as @@ -1,18 +1,18 @@ table wgEncodeGencodeAttrs "Basic set of attributes associated with all Gencode transcripts." ( string geneId; "Gene identifier" string geneName; "Gene name" string geneType; "BioType of gene" - string geneStatus; "Status of gene" + string geneStatus; "Status of gene (obsolete)" string transcriptId; "Transcript identifier" string transcriptName; "Transcript name" string transcriptType; "BioType of transcript" - string transcriptStatus; "Status of transcript" + string transcriptStatus; "Status of transcript (obsolete)" string havanaGeneId; "HAVANA identifier if gene is in HAVANA" string havanaTranscriptId; "HAVANA identifier if transcript is in HAVANA" string ccdsId; "CCDS identifier if transcript is in CCDS" int level; "GENCODE level: 1 = experimental confirmed, 2 = manual, 3 = automated" string transcriptClass; "high level type of transcript" string proteinId; "Protein identifier (not loaded on many older versions of GENCODE)" )