5191e651985210540e1480f675ebb0b21f67b5e7 dschmelt Mon Jul 8 09:10:43 2019 -0700 Added cut site sentence and fixed typos crisprAll #23514 diff --git src/hg/makeDb/trackDb/crisprAll.html src/hg/makeDb/trackDb/crisprAll.html index 9bf9b49..c4f5eb8 100644 --- src/hg/makeDb/trackDb/crisprAll.html +++ src/hg/makeDb/trackDb/crisprAll.html @@ -124,31 +124,31 @@ the track show the old Doench 2016 scores and this version of the track shows new Doench 2016 scores. Old and new scores are almost identical, they are correlated to 0.99 and for more than 80% of the guides the difference is below 0.02. However, for very few guides, the difference can be bigger. In case of doubt, we recommend the new scores. Crispor.org can display both scores and many more with the "Show all scores" link.

Data Access

The raw data can be explored interactively with the Table Browser. For automated analysis, the genome annotation is stored in a bigBed file that can be downloaded from our download server. The files for this track are called crispr.bb and crisprDetails.tab. Individual regions or the whole genome annotation can be obtained using our tool bigBedToBed, -which can be compiled from the source code or downloaded as a precompiled +which can be compiled from the source code or downloaded as a pre-compiled binary for your system. Instructions for downloading source code and binaries can be found here. The tool can also be used to obtain only features within a given range, e.g. bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/${db}/${track}/crispr.bb -chrom=chr21 -start=0 -end=1000000 stdout

Credits

Track created by Maximilian Haeussler, with helpful input from Jean-Paul Concordet (MNHN Paris) and Alberto Stolfi (NYU).

References