235b3515cdb4f7f73987692bc41e8006a16b181b
lrnassar
  Thu Jul 4 15:35:42 2019 -0700
Updating visibilities and descriptions for new V5 transMap #23729

diff --git src/hg/makeDb/trackDb/transMapTailer.html src/hg/makeDb/trackDb/transMapTailer.html
index 9298dd3..2d96382 100644
--- src/hg/makeDb/trackDb/transMapTailer.html
+++ src/hg/makeDb/trackDb/transMapTailer.html
@@ -72,43 +72,43 @@
 <h2>Data Access</h2>
 
 <p>
 The raw data for these tracks can be accessed interactively through the
 <a href="hgTables">Table Browser</a> or the
 <a href="hgIntegrator">Data Integrator</a>.
 For automated analysis, the annotations are stored in
 <a href="../goldenPath/help/bigPsl.html">bigPsl</a> files (containing a
 number of extra columns) and can be downloaded from our
 <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/transMap/">download server</a>, 
 or queried using our <a href="../goldenPath/help/api.html">API</a>. For more 
 information on accessing track data see our 
 <a href="../FAQ/FAQdownloads.html#download36">Track Data Access FAQ</a>.
 The files are associated with these tracks in the following way:
 <ul>
-<li>TransMap Ensembl - <tt>$db.ensembl.transMapV??.bigPsl</tt></li>
-<li>TransMap RefGene - <tt>$db.refseq.transMapV??.bigPsl</tt></li>
-<li>TransMap RNA - <tt>$db.rna.transMapV??.bigPsl</tt></li>
-<li>TransMap ESTs - <tt>$db.est.transMapV??.bigPsl</tt></li>
+<li>TransMap Ensembl - <tt>$db.ensembl.transMapV5.bigPsl</tt></li>
+<li>TransMap RefGene - <tt>$db.refseq.transMapV5.bigPsl</tt></li>
+<li>TransMap RNA - <tt>$db.rna.transMapV5.bigPsl</tt></li>
+<li>TransMap ESTs - <tt>$db.est.transMapV5.bigPsl</tt></li>
 </ul>
 Individual regions or the whole genome annotation can be obtained using our tool
 <tt>bigBedToBed</tt> which can be compiled from the source code or downloaded as
 a precompiled binary for your system. Instructions for downloading source code and
 binaries can be found
 <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">here</a>.
 The tool can also be used to obtain only features within a given range, for example:
 <p><tt>
-bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/$db/transMap/V4/$db.refseq.transMapV4.bigPsl
+bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/$db/transMap/V5/$db.refseq.transMapV5.bigPsl
 -chrom=chr6 -start=0 -end=1000000 stdout
 </tt>
 
 <H2>Credits</H2>
 
 <P>
 This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data
 submitted to the international public sequence databases by 
 scientists worldwide and annotations produced by the RefSeq,
 Ensembl, and GENCODE annotations projects.</P>
 
 <H2>References</H2>
 <p>
 Siepel A, Diekhans M, Brejov&#225; B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,
 Lau C <em>et al</em>.