9bd775a156a382caf90b876924c333e656c4de4c
lrnassar
Thu Jul 4 14:26:04 2019 -0700
Fixing little typo #23629
diff --git src/hg/makeDb/trackDb/transMapTailer.html src/hg/makeDb/trackDb/transMapTailer.html
index ca53275..9298dd3 100644
--- src/hg/makeDb/trackDb/transMapTailer.html
+++ src/hg/makeDb/trackDb/transMapTailer.html
@@ -21,31 +21,31 @@
Source transcript alignments were obtained from vertebrate organisms
in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank
mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,
were used as available.
For all vertebrate assemblies that had BLASTZ alignment chains and
nets to the $organism ($db) genome, a subset of the alignment chains were
selected as follows:
- For organisms whose branch distance was no more than 0.5
(as computed by phyloFit, see Conservation track description for details),
syntenic filtering was used. Reciprocal best nets were used if available;
otherwise, nets were selected with the netfilter -syn command.
The chains corresponding to the selected nets were used for mapping.
- For more distant species, where the determination of synteny is difficult,
the full set of chains was used for mapping. This allows for more genes to
- map at the expense of some mapping to paralogus regions. The
+ map at the expense of some mapping to paralogous regions. The
post-alignment filtering step removes some of the duplications.
The pslMap program was used to do a base-level projection of
the source transcript alignments via the selected chains
to the $organism genome, resulting in pairwise alignments of the source transcripts to
the genome.
The resulting alignments were filtered with pslCDnaFilter
with a global near-best criteria of 0.5% in finished genomes
(human and mouse) and 1.0% in other genomes. Alignments
where less than 20% of the transcript mapped were discarded.
To ensure unique identifiers for each alignment, cDNA and gene accessions were