3fd63f8af085564134cae5e8c3be6b6cb7adaa14
markd
  Sun Jul 7 16:08:45 2019 -0700
import of GENCODE v31, v23lift37, and vM21

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index a623ee4..f93ee88 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -33463,37 +33463,37 @@
     # primaryDataSize: 30,841,362
     # primaryIndexSize: 6,892
     # zoomLevels: 8
     # chromCount: 24
     # basesCovered: 580,564,080
     # meanDepth (of bases covered): 3.668451
     # minDepth: 1.000000
     # maxDepth: 81.000000
     # std of depth: 5.825349
 
     # link into gbdb
     mkdir -p /gbdb/hg19/dgv
     ln -s `pwd`/dgvGold.bb /gbdb/hg19/dgv/
 
 #############################################################################
-2019-05-23: import of UCSC GENCODE group processing of GENCODE V31lift37 (markd)
-    # import of pre-release, it will be promoted if there are no changes in the final release.
+2019-07-05: import of UCSC GENCODE group processing of GENCODE V31lift37 (markd)
+    # Replaced import of pre-release
     # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
 
     # download, build and load tables
-    mkdir -p /hive/data/genomes/hg19/bed/gencodeV31lift37-pre
-    pushd /hive/data/genomes/hg19/bed/gencodeV31lift37-pre
+    mkdir -p /hive/data/genomes/hg19/bed/gencodeV31lift37
+    pushd /hive/data/genomes/hg19/bed/gencodeV31lift37
     (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
 
     # compare tables from previous release to see if number changed makes
     # sense.  Results are in gencode-cmp.tsv
 
     # generate trackDb and joiner blurb
     pushd ~/kent/src/hg/makeDb/trackDb
     ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg19 31lift37 97 'June 2019'
 
     # Update human/hg19/wgEncodeGencodeSuper.html and update 'Release Notes'
     # to describe new release. [ONLY if it's going to be pushed]
 
     # edit human/hg19/trackDb.wgEncode.ra to add new .ra file include
     make DBS=hg19