3fd63f8af085564134cae5e8c3be6b6cb7adaa14 markd Sun Jul 7 16:08:45 2019 -0700 import of GENCODE v31, v23lift37, and vM21 diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt index d174ebf..cb132b6 100644 --- src/hg/makeDb/doc/hg38/gencode.txt +++ src/hg/makeDb/doc/hg38/gencode.txt @@ -465,37 +465,37 @@ # Edit human/hg38/wgEncodeGencodeSuper.html and update 'Release Notes' # to describe new release. [ONLY if it's going to be pushed] # edit human/hg38/trackDb.gencode.ra to add new .ra file include make DBS=hg38 ## only if being pushed to RR: # edit all.joiner to add ~/tmp/gencodeV30.joiner # verify with: pushd /hive/data/genomes/hg38/bed/gencodeV30 make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck # commit all ######################################################################### -2019-05-17: import of UCSC GENCODE group processing of GENCODE V31 (markd) - # import of pre-release, it will be promoted if there are no changes in the final release. +2019-07-03: import of UCSC GENCODE group processing of GENCODE V31 (markd) + # Replaced import of pre-release # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions # download, build and load tables - mkdir -p /hive/data/genomes/hg38/bed/gencodeV31-pre - pushd /hive/data/genomes/hg38/bed/gencodeV31-pre + mkdir -p /hive/data/genomes/hg38/bed/gencodeV31a + pushd /hive/data/genomes/hg38/bed/gencodeV31 (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out& # compare tables from previous release to see if number changed makes # sense. Results are in gencode-cmp.tsv # generate trackDb and joiner blurb pushd ~/kent/src/hg/makeDb/trackDb ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg38 31 97 'June 2019' # Edit human/hg38/wgEncodeGencodeSuper.html and update 'Release Notes' # to describe new release. [ONLY if it's going to be pushed] # edit human/hg38/trackDb.gencode.ra to add new .ra file include make DBS=hg38