3fd63f8af085564134cae5e8c3be6b6cb7adaa14
markd
  Sun Jul 7 16:08:45 2019 -0700
import of GENCODE v31, v23lift37, and vM21

diff --git src/hg/makeDb/doc/mm10.txt src/hg/makeDb/doc/mm10.txt
index 5cff292..5f9dbf9 100644
--- src/hg/makeDb/doc/mm10.txt
+++ src/hg/makeDb/doc/mm10.txt
@@ -17907,53 +17907,53 @@
     # edit  all.joiner to add ~/tmp/gencodeVM21.joiner
     # verify with:
     pushd /hive/data/genomes/mm10/bed/gencodeVM21
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck db=mm10
 
     # commit all and make push request, the file tables.lst will have the
     # list of tables for the push request.
 
     cd ~/kent/src/hg/makeDb/trackDb
     make alpha DBS=mm10
 
     # commit all
     # if pushing public, add ticket and MARK QA READY
 
 #########################################################################
-2019-05-23: import of UCSC GENCODE group processing of GENCODE VM22 (markd)
-    # import of pre-release, it will be promoted if there are no changes in the final release.
+2019-07-03: import of UCSC GENCODE group processing of GENCODE VM22 (markd)
+    # Replaced import of pre-release
     # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
 
     # download, build and load tables
-    mkdir -p /hive/data/genomes/mm10/bed/gencodeVM22-pre
-    pushd /hive/data/genomes/mm10/bed/gencodeVM22-pre
+    mkdir -p /hive/data/genomes/mm10/bed/gencodeVM22
+    pushd /hive/data/genomes/mm10/bed/gencodeVM22
     (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
 
     ##  gencode-cmp.tsv check to see if sizes make sense
 
     # generate trackDb and joiner blurb
     pushd ~/kent/src/hg/makeDb/trackDb
     ../../makeDb/outside/gencode/gencodeGenerateTrackDbs mm10 M22 97 'June 2019'
 
     ## only if being pushed to RR:
     # Update mouse/mm10/wgEncodeGencodeSuper.html
     # Update 'Release Notes' to describe new release.
 
     # edit mouse/mm10/trackDb.gencode.ra to add new .ra file include
     make DBS=mm10
 
     ## only if being pushed to RR:
     # edit  all.joiner to add ~/tmp/gencodeVM22.joiner
     # verify with:
-    pushd /hive/data/genomes/mm10/bed/gencodeVM22-pre
+    pushd /hive/data/genomes/mm10/bed/gencodeVM22
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck db=mm10
 
     # commit all and make push request, the file tables.lst will have the
     # list of tables for the push request.
 
     cd ~/kent/src/hg/makeDb/trackDb
     make alpha DBS=mm10
 
     # commit all
     # if pushing public, add ticket and MARK QA READY
 
 #########################################################################