3fd63f8af085564134cae5e8c3be6b6cb7adaa14 markd Sun Jul 7 16:08:45 2019 -0700 import of GENCODE v31, v23lift37, and vM21 diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 45edbc5..c7875bc 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -26,32 +26,32 @@ ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE # # - ensemblPrevVersion is use to get chrom name mappings for pre-release, # as this doesn't change between release. ## #db = hg38 db = hg19 #db = mm10 -#preRelease = no -preRelease = yes +preRelease = no +#preRelease = yes ifeq (${db},mm10) grcRefAssembly = GRCm38 ver = M22 prevVer = M21 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation ensemblVer = 97_38 ensemblPrevVer = 96_38 ensemblCDnaDb = mus_musculus_cdna_${ensemblPrevVer} else ifeq (${db},hg38) grcRefAssembly = GRCh38 ver = 31 prevVer = 30 gencodeOrg = Gencode_human