46dc535d3f532f80ada63859bc948ad4af0a72d3
angie
  Mon Jul 8 10:27:37 2019 -0700
Rewrote bedJoinTabOffset in C to handle very large files.  Renamed script to bedJoinTabOffset.py .  refs #23283
The new C version does not yet support any of the script's command line options.

diff --git src/utils/makefile src/utils/makefile
index e421ea7..28fd9a4 100644
--- src/utils/makefile
+++ src/utils/makefile
@@ -5,30 +5,31 @@
 include ${kentSrc}/inc/localEnvironment.mk
 include ${kentSrc}/inc/common.mk
 
 # note: lists such as the following need to be defined *before*
 # they are used in the wildcard target rules.  An oddity of gnu make
 
 # define the list of user applications to build
 
 UTILS_APPLIST = \
 	addCols \
 	ave \
 	aveCols \
 	bamToPsl \
 	bedClip \
 	bedGraphToBigWig \
+	bedJoinTabOffset \
 	bedToBigBed \
 	bigBedInfo \
 	bigBedNamedItems \
 	bigBedSummary \
 	bigBedToBed \
 	bedCommonRegions \
 	bedGeneParts \
 	bedGraphPack \
 	bedPileUps \
 	bedRemoveOverlap \
 	bedRestrictToPositions \
 	bigWigAverageOverBed  \
 	bigWigCat \
 	bigWigCorrelate \
 	bigWigCluster \
@@ -135,31 +136,31 @@
 	scrambleFa \
 	subs \
 	tableSum \
 	textHist2 \
 	udcCleanup \
 	undupFa \
 	upper \
 	venn \
 	verticalSplitSqlTable \
 	weedLines \
 
 
 # list of scripts to install
 
 USER_APP_SCRIPTS = \
-	bedJoinTabOffset \
+	bedJoinTabOffset.py \
 	expMatrixToBarchartBed \
 	ucscApiClient \
 	tdbRename \
 	tdbSort \
 	webSync
 
 SCRIPT_FILES = \
 	agpToLift \
 	apacheLogParse \
 	bedCollapse.pl \
 	bedFixBlockOverlaps \
 	bedOverlapMerge \
 	bedSingleCover.pl \
 	bedBetween \
 	doLocusName \