57a5703fb48a7708d61b86afc42e4136c1762f22 ccpowell Fri Jul 12 15:56:37 2019 -0700 Swapping MySQL for MariaDB on newsarch.html, refs #23597 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 01dc200..e5cd71a 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -2047,50 +2047,50 @@ with a total size of 1,679,203,469 bases. </p> <p> Bulk downloads of the sequence and annotation data may be obtained from the <a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/danRer11">Genome Browser FTP server</a> or the <a href="http://hgdownload.soe.ucsc.edu/downloads.html#zebrafish">Downloads page</a>. Please observe the <a href="https://genome.ucsc.edu/FAQ/FAQdownloads.html#download2"> conditions for use</a> when accessing and using these data sets. The annotation tracks for this browser were generated by UCSC and collaborators worldwide. See the <a href="credits.html#zebrafish_credits">Credits page</a> for a detailed list of the organizations and individuals who contributed to this release. </p> <a name="102717"></a> -<h2>Oct. 27, 2017 Public European UCSC MySQL server now available!</h2> +<h2>Oct. 27, 2017 Public European UCSC MariaDB server now available!</h2> <p> -We are pleased to announce that a public MySQL server of UCSC Genome Browser +We are pleased to announce that a public MariaDB server of UCSC Genome Browser data is now available in Europe! This should speed up programmatic access to -the underlying MySQL databases for users in Europe. Connect to this new MySQL +the underlying MariaDB databases for users in Europe. Connect to this new MariaDB server using the command:</p> <pre><code> mysql --user=genome --host=genome-euro-mysql.soe.ucsc.edu -A</code></pre> <p> -More information about connecting to our public MySQL servers can be found on our -<a href="help/mysql.html">MySQL access</a> page.</p> +More information about connecting to our public MariaDB servers can be found on our +<a href="help/mysql.html">MariaDB access</a> page.</p> <p> Additionally, we have configured both the <a href="help/gbib.html">Genome Browser in a Box</a> (GBiB) and <a href="help/gbic.html"> Genome Browser in the Cloud</a> (GBiC) to take advantage of this new server. If you are in Europe and have auto-updates enabled for your GBiB, it should automatically switch to using this new server the next time it updates. The GBiC will only auto-configure this connection when first created, otherwise, you will need to manually configure -which MySQL server you want your mirror to use.</p> +which MariaDB server you want your mirror to use.</p> <a name="101817"></a> <h2>Oct. 18, 2017 New GTEx eQTL 44 tissues and summary tracks on hg19</h2> <p> We are pleased to announce two new GTEx eQTL tracks in the GRCh37/hg19 browser within the "Regulation" track category. These tracks show genetic variants associated with and likely causal for differences in gene expression in 44 human tissues from the <a href="https://www.genome.gov/27543767/" target="_blank">Genotype-Tissue Expression (GTEx)</a> V6 data release. The data items displayed are gene expression quantitative trait loci within 1MB of gene transcription start sites (cis-eQTLs), significantly associated with gene expression and in the credible set of variants for the gene at a high confidence level (95%).</p> <p> <b><a href="../cgi-bin/hgGtexTrackSettings?db=hg19&g=gtexEqtlCluster" target="_blank">hg19: GTEx Combined eQTL</a></b></br> @@ -5650,31 +5650,31 @@ <p> In addition to the tutorial, users can access other useful training materials including the animated PowerPoint slides used as a basis for the tutorial, a suggested script for the slides, slide handouts, and exercises.</p> <a name="091712"></a> <h2>Sep. 17, 2012 Retiring the Proteome Browser </h2> <p> We are announcing the imminent retirement of the Proteome Browser. The Proteome Browser was introduced in 2003 to provide access to protein-specific information independent of the genomic details presented in the Genome Browser. Since then we've incorporated much of this information into the UCSC Genes details page accessible from the Genome Browser, and into the columns of the Gene Sorter. Our decision to retire this tool was based on its low usage and our desire to focus our work on the more frequently used UCSC Genes track and the Gene Sorter. Access to the databases that supported the Proteome Browser (uniProt and proteome) will still be available through the Table -Browser and our public MySQL server.</p> +Browser and our public MariaDB server.</p> <a name="081612"></a> <h2>Aug. 16, 2012 Announcing a Genome Browser for the medium ground finch</h2> <p> We have released a browser for the Medium ground finch, <em>Geospiza fortis</em>, renowned as one of naturalist Charles Darwin's Galapagos finches. This species, which has been the subject of many evolutionary studies, is one of a group of birds that evolved over a few million years from a single ancestral species into multiple species whose beak sizes and shapes are specialized for using different food resources. The phenotypic diversity of these birds contributed to Darwin's theory of evolution. The significance of this genome assembly is described in the Aug. 16, 2012, <a href="https://cbse.soe.ucsc.edu/news/article/1939" target="_blank">press release</a> issued by the UCSC Center for Biomolecular Science and Engineering (CBSE).</p> <p> The initial Medium ground finch genome assembly (GeoFor_1.0, UCSC version geoFor1) is the product of a collaboration between the Genome 10K project and Beijing Genomics Institute (BGI) to sequence