9e3fea3eabab398560715780a111a3fd2c6eac75
hiram
  Tue Jul 9 10:04:59 2019 -0700
lastz chainNet to regenRn0 and rheMac10 refs #21579 #23771

diff --git src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra
index ed351d6..6748058 100644
--- src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra
+++ src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra
@@ -358,30 +358,83 @@
     track chainNetMacNem1Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetMacNem1
 
         track netMacNem1
         parent chainNetMacNem1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment net
         type netAlign macNem1 chainMacNem1
         html chainNet
 
 ################################################################
+# rheMac10 - Rhesus - Macaca mulatta - primate
+################################################################
+track chainNetRheMac10
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 498
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
+matrixHeader A, C, G, T
+otherDb rheMac10
+chainMinScore 5000
+chainLinearGap medium
+html chainNet
+
+    track chainNetRheMac10Viewchain
+    shortLabel Chain
+    view chain
+    visibility pack
+    parent chainNetRheMac10
+    spectrum on
+
+       track chainRheMac10
+        parent chainNetRheMac10Viewchain
+        subGroups view=chain
+        shortLabel $o_Organism Chain
+        longLabel $o_Organism ($o_date) Chained Alignments
+        type chain rheMac10
+        html chainNet
+
+    track chainNetRheMac10Viewnet
+    shortLabel Net
+    view net
+    visibility full
+    parent chainNetRheMac10
+
+        track netRheMac10
+        parent chainNetRheMac10Viewnet
+        subGroups view=net
+        shortLabel $o_Organism Net
+        longLabel $o_Organism ($o_date) Alignment net
+        type netAlign rheMac10 chainRheMac10
+        html chainNet
+
+################################################################
 # rheMac8 - Rhesus - Macaca mulatta - primate
 ################################################################
 track chainNetRheMac8
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 0,0,0
 altColor 100,50,0
 type bed 3