894bef193c60e6b0076536bfbdb2cf17004379df jnavarr5 Mon Jul 8 12:34:44 2019 -0700 Updating http to https for panTro1, uiLinks cronjob. diff --git src/hg/makeDb/trackDb/chimp/bacEndPairs.html src/hg/makeDb/trackDb/chimp/bacEndPairs.html index e151862..7f98605 100644 --- src/hg/makeDb/trackDb/chimp/bacEndPairs.html +++ src/hg/makeDb/trackDb/chimp/bacEndPairs.html @@ -23,36 +23,36 @@ when the BAC end pair aligns to only one location in the genome (after filtering). When a BAC end pair or clone aligns to multiple locations, the score is calculated as 1500/(number of alignments).

Methods

The BAC end sequences in this track were obtained from Chimpanzee BAC clone libraries RPCI-43 and PTB1. The BAC end sequences were produced at RIKEN Genomic Sciences Center, in association with the Korea Research Institute of Bioscience and Biotechnology (KRIBB), using the methods described in -Construction and Analysis of a Human-Chimpanzee Comparative Clone Map.

The BAC end sequences were aligned to the Chimpanzee genome assembly using the blat program developed by Jim Kent (UCSC). The pairing of end sequences from alignments was performed using tools developed by Terry Furey (UCSC).

Credits

The BAC end sequences and pairing information were obtained from NCBI, as processed by their BAC End pipeline, managed by Deanna Church. Thanks to Todd Taylor at RIKEN for assistance with producing this track.

Information about the clone, including how it can be obtained, may be found at the NCBI Clone Registry. To view the registry entry for a specific clone, open the details page for the clone and click on its name at the top of the page. A large selection of clone libraries is distributed by the - BACPAC Resources Center. + BACPAC Resources Center.