17ebf3b49d9a9f89f29c9580be6d98f705190cd2 lrnassar Wed Jul 10 09:00:55 2019 -0700 Small changes from CR #23802 diff --git src/hg/makeDb/trackDb/transMapTailerV5.html src/hg/makeDb/trackDb/transMapTailerV5.html index 2d96382..a785ef7 100644 --- src/hg/makeDb/trackDb/transMapTailerV5.html +++ src/hg/makeDb/trackDb/transMapTailerV5.html @@ -78,31 +78,31 @@ For automated analysis, the annotations are stored in <a href="../goldenPath/help/bigPsl.html">bigPsl</a> files (containing a number of extra columns) and can be downloaded from our <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/transMap/">download server</a>, or queried using our <a href="../goldenPath/help/api.html">API</a>. For more information on accessing track data see our <a href="../FAQ/FAQdownloads.html#download36">Track Data Access FAQ</a>. The files are associated with these tracks in the following way: <ul> <li>TransMap Ensembl - <tt>$db.ensembl.transMapV5.bigPsl</tt></li> <li>TransMap RefGene - <tt>$db.refseq.transMapV5.bigPsl</tt></li> <li>TransMap RNA - <tt>$db.rna.transMapV5.bigPsl</tt></li> <li>TransMap ESTs - <tt>$db.est.transMapV5.bigPsl</tt></li> </ul> Individual regions or the whole genome annotation can be obtained using our tool -<tt>bigBedToBed</tt> which can be compiled from the source code or downloaded as +<tt>bigBedToBed</tt>, which can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries can be found <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">here</a>. The tool can also be used to obtain only features within a given range, for example: <p><tt> bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/$db/transMap/V5/$db.refseq.transMapV5.bigPsl -chrom=chr6 -start=0 -end=1000000 stdout </tt> <H2>Credits</H2> <P> This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data submitted to the international public sequence databases by scientists worldwide and annotations produced by the RefSeq,