f945af205d2f1cc66a529ebb71fd7907517bf2b5 galt Fri Aug 9 13:57:01 2019 -0700 Incrementing blat version to 36x4 for Angies gfServer improved handling of _alts. diff --git src/blat/version.doc src/blat/version.doc index 00d7266..d384f64 100644 --- src/blat/version.doc +++ src/blat/version.doc @@ -1,20 +1,21 @@ 37: o (in 36x1) Fixed problem with -fastMap option that made it put in gaps in the allignment sometimes when a short mismatch would be a better choice. o (in 36x2) Fixed problem with -maxIntron set to non-default value on protein query. o (in 36x3) Added ipv6 support. + o (in 36x4) Added _alt support. 36: o (in 35x1) added repMatch default values for tileSizes 16 to 18 in genoFind.c 35: o (in 34x1) Making total query output reporting a 64 bit number to avoid overflow when people using more than 4 gig of query sequence. o (in 34x2) Fixed -out=blast to use +/- instead of -/+ for non-translated. o (in 34x3) Fixed -minScore, filter was not working when over half query-size. o (in 34x4) Made it convert u's to t's for RNA sequence stuff. o (in 34x5) Made gfServer calculate repMatch based on stepSize/tileSize combination the way blat does rather than just being good for stepSize 11. o (in 34x6) Fixed negative strand pcr psl output o (in 34x7) Made it check and error out if the same name is reused in the target database. o (in 34x8) Truncate in output PCR primers that dangle off target chrom ends.