d323472f6693dec4cfd0533838563fc6bcdf25f2
hiram
  Fri Aug 9 17:52:50 2019 -0700
xenoRefGene description page fixed up and custom .as definition for the track and correct labelFields on xenoRefGene and ncbiGene refs #23734

diff --git src/hg/utils/automation/asmHubTrackDb.sh src/hg/utils/automation/asmHubTrackDb.sh
index 5972696..bd3aa91 100755
--- src/hg/utils/automation/asmHubTrackDb.sh
+++ src/hg/utils/automation/asmHubTrackDb.sh
@@ -347,31 +347,31 @@
 ln -s $buildDir/trackData/ncbiGene/$asmId.ncbiGene.ix $buildDir/ixIxx/${asmId}.ncbiGene.ix
 ln -s $buildDir/trackData/ncbiGene/$asmId.ncbiGene.ixx $buildDir/ixIxx/${asmId}.ncbiGene.ixx
   printf "track ncbiGene
 longLabel NCBI gene predictions
 shortLabel NCBI Genes
 visibility pack
 color 0,80,150
 altColor 150,80,0
 colorByStrand 0,80,150 150,80,0
 bigDataUrl bbi/%s.ncbiGene.bb
 type bigGenePred
 html html/%s.ncbiGene
 searchIndex name%s
 url https://www.ncbi.nlm.nih.gov/gene/?term=\$\$
 urlLabel Entrez gene
-labelFields geneName,geneName2,name
+labelFields geneName,geneName2
 group genes\n\n" "${asmId}" "${asmId}" "${searchTrix}"
 
   $scriptDir/asmHubNcbiGene.pl $asmId $buildDir/html/$asmId.names.tab $buildDir/trackData > $buildDir/html/$asmId.ncbiGene.html
 
 haveNcbiGene="yes"
 fi
 
 ###################################################################
 # CpG Islands composite
 export cpgVis="hide"
 # if there is no unmasked track, then set cpgVis to pack
 if [ ! -s ${buildDir}/trackData/cpgIslands/unmasked/${asmId}.cpgIslandExtUnmasked.bb ]; then
   cpgVis="pack"
 fi
 if [ -s ${buildDir}/trackData/cpgIslands/unmasked/${asmId}.cpgIslandExtUnmasked.bb -o -s ${buildDir}/trackData/cpgIslands/masked/${asmId}.cpgIslandExt.bb ]; then
@@ -466,38 +466,38 @@
 visibility %s
 color 180,0,0
 type bigGenePred
 bigDataUrl bbi/%s.augustus.bb
 html html/%s.augustus\n\n" "${augustusVis}" "${asmId}" "${asmId}"
 $scriptDir/asmHubAugustusGene.pl $asmId $buildDir/html/$asmId.names.tab $buildDir/bbi/$asmId > $buildDir/html/$asmId.augustus.html
 fi
 
 ###################################################################
 # xenoRefGene genes
 if [ -s ${buildDir}/trackData/xenoRefGene/${asmId}.xenoRefGene.bb ]; then
 rm -f ${buildDir}/bbi/${asmId}.xenoRefGene.bb
 ln -s ${buildDir}/trackData/xenoRefGene/${asmId}.xenoRefGene.bb ${buildDir}/bbi/${asmId}.xenoRefGene.bb
 
 printf "track xenoRefGene
-shortLabel GenBank mRNAs
-longLabel GenBank mRNAs mapped to this assembly with blat procedure
+shortLabel RefSeq mRNAs
+longLabel RefSeq mRNAs mapped to this assembly
 group rna
 visibility pack
 color 180,0,0
 type bigGenePred
 bigDataUrl bbi/%s.xenoRefGene.bb
-labelFields geneName,geneName2,name
+labelFields geneName,geneName2
 searchIndex name,geneName
 html html/%s.xenoRefGene\n\n" "${asmId}" "${asmId}"
 $scriptDir/asmHubXenoRefGene.pl $asmId $buildDir/html/$asmId.names.tab $buildDir/trackData > $buildDir/html/$asmId.xenoRefGene.html
 fi
 
 ###################################################################
 # gapOverlap
 # if [ -s ${buildDir}/trackData/gapOverlap/${asmId}.gapOverlap.bb ]; then
 # rm -f ${buildDir}/bbi/${asmId}.gapOverlap.bb
 # ln -s ${buildDir}/trackData/gapOverlap/${asmId}.gapOverlap.bb ${buildDir}/bbi/${asmId}.gapOverlap.bb
 
 # printf "track gapOverlap
 # shortLabel Gap Overlaps
 # longLabel Exactly identical sequence on each side of a gap
 # group map