d7620abf791fd7d117a9c8b5a810a92274146c0a kent Fri Aug 9 12:34:44 2019 -0700 Refactoring a bit to improve error reporting. Going from higher level to lower level .ra file parsing functions on the spec file so can keep track of line numbers when we are checking for errors better. diff --git src/tabFile/tabToTabDir/test/expected/specimen.tsv src/tabFile/tabToTabDir/test/expected/specimen.tsv new file mode 100644 index 0000000..92b714d --- /dev/null +++ src/tabFile/tabToTabDir/test/expected/specimen.tsv @@ -0,0 +1,15 @@ +#id donor organ tissue +AB_S8 temporal lobe cortex AB_S8 brain temporal lobe cortex +AB_S8 hippocampus - healthy AB_S8 brain hippocampus - healthy +AB_S11 temporal lobe cortex AB_S11 brain temporal lobe cortex +AB_S1 temporal lobe cortex AB_S1 brain temporal lobe cortex +AB_S2 temporal lobe cortex AB_S2 brain temporal lobe cortex +AB_S3 temporal lobe cortex AB_S3 brain temporal lobe cortex +AB_S4 temporal lobe cortex AB_S4 brain temporal lobe cortex +AB_S5 temporal lobe cortex AB_S5 brain temporal lobe cortex +AB_S5 hippocampus - healthy AB_S5 brain hippocampus - healthy +AB_S7 temporal lobe cortex AB_S7 brain temporal lobe cortex +FB_S1 fetal brain cortex FB_S1 brain fetal brain cortex +FB_S2 fetal brain cortex FB_S2 brain fetal brain cortex +FB_S3 fetal brain cortex FB_S3 brain fetal brain cortex +FB_S6 fetal brain cortex FB_S6 brain fetal brain cortex