a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 kent Fri Aug 9 12:39:11 2019 -0700 Oops, need to rename the test dir diff --git src/tabFile/tabToTabDir/test/spec.txt src/tabFile/tabToTabDir/test/spec.txt deleted file mode 100644 index 89d1ac7..0000000 --- src/tabFile/tabToTabDir/test/spec.txt +++ /dev/null @@ -1,50 +0,0 @@ -table a_strex_test id -id "constant ID" -array0 GEO_Series_summary[0] -array1 GEO_Series_summary[1] -array2 GEO_Series_summary[2] -mm separate(submission_date, '-', 1) -dd separate(submission_date, '-', 2) -yyyy separate(submission_date, '-', 0) -usaDate separate(submission_date, '-', 1) + '/' + separate(submission_date, '-', 2) + '/' + separate(submission_date, '-', 0) -company split(fluidics_chip, 0) -md5.sum md5(GEO_Series_summary) -organ trim(between('human', title, 'transcriptome')) -untrimmed_organ "'" + between('human', title, 'transcriptome') + "'" - -table project id -id data_set_id -title -lab lab -submitter - -table donor biosample_source_id -biosample_source_id -species -biosample_source_gender -biosample_source_age biosample_source_age_value -biosample_source_age_unit -# GEO_Sample_age looks like: prenatal 16-18 W -geo_age split(GEO_Sample_age, 1) -geo_age_unit split(GEO_Sample_age, 2) -geo_life_stage split(GEO_Sample_age, 0) -project @project - -table specimen id -id biosample_source_id + ' ' + split(sample_label, 0) + ' ' + split(sample_label, 1) + ' ' + split(sample_label, 2) -donor @donor -organ "brain" -tissue split(sample_label, 0) + ' ' + split(sample_label, 1) + ' ' + split(sample_label, 2) - -table fluidics_chip id -id lab_quake_fluidics_chip -specimen @specimen - -table sample id -fluidics_chip @fluidics_chip -specimen @specimen -donor @donor -id ncbi_bio_sample -biosample_cell_type -lab_quake_cell -