a7e81d5ffdafdbf237a7ecda1ce4ad77c8d37d70 kent Fri Aug 9 12:39:11 2019 -0700 Oops, need to rename the test dir diff --git src/tabFile/tabToTabDir/tests/spec.txt src/tabFile/tabToTabDir/tests/spec.txt new file mode 100644 index 0000000..89d1ac7 --- /dev/null +++ src/tabFile/tabToTabDir/tests/spec.txt @@ -0,0 +1,50 @@ +table a_strex_test id +id "constant ID" +array0 GEO_Series_summary[0] +array1 GEO_Series_summary[1] +array2 GEO_Series_summary[2] +mm separate(submission_date, '-', 1) +dd separate(submission_date, '-', 2) +yyyy separate(submission_date, '-', 0) +usaDate separate(submission_date, '-', 1) + '/' + separate(submission_date, '-', 2) + '/' + separate(submission_date, '-', 0) +company split(fluidics_chip, 0) +md5.sum md5(GEO_Series_summary) +organ trim(between('human', title, 'transcriptome')) +untrimmed_organ "'" + between('human', title, 'transcriptome') + "'" + +table project id +id data_set_id +title +lab lab +submitter + +table donor biosample_source_id +biosample_source_id +species +biosample_source_gender +biosample_source_age biosample_source_age_value +biosample_source_age_unit +# GEO_Sample_age looks like: prenatal 16-18 W +geo_age split(GEO_Sample_age, 1) +geo_age_unit split(GEO_Sample_age, 2) +geo_life_stage split(GEO_Sample_age, 0) +project @project + +table specimen id +id biosample_source_id + ' ' + split(sample_label, 0) + ' ' + split(sample_label, 1) + ' ' + split(sample_label, 2) +donor @donor +organ "brain" +tissue split(sample_label, 0) + ' ' + split(sample_label, 1) + ' ' + split(sample_label, 2) + +table fluidics_chip id +id lab_quake_fluidics_chip +specimen @specimen + +table sample id +fluidics_chip @fluidics_chip +specimen @specimen +donor @donor +id ncbi_bio_sample +biosample_cell_type +lab_quake_cell +