22a67b8eddff877e9265906cfbc4df5a41c3e0db lrnassar Mon Aug 5 12:01:54 2019 -0700 Pointing hard-coded links to hgdownload refs #23734 diff --git src/hg/makeDb/doc/VGP/mkAsmStats.pl src/hg/makeDb/doc/VGP/mkAsmStats.pl index 979c3a4..ab72eb9 100755 --- src/hg/makeDb/doc/VGP/mkAsmStats.pl +++ src/hg/makeDb/doc/VGP/mkAsmStats.pl @@ -208,31 +208,31 @@ $commonName =~ s/.*\(//; $commonName =~ s/\)//; $sciName =~ s/.*:\s+//; $sciName =~ s/\s+\(.*//; } } elsif ($line =~ m/Taxid:/) { if ($taxId =~ m/notFound/) { ++$itemsFound; $taxId = $line; $taxId =~ s/.*:\s+//; } } } close (FH); $commonName = $betterName{$asmId} if (exists($betterName{$asmId})); - printf "<tr><th>%d</th><td align=center><a href='https://genome-test.gi.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.gi.ucsc.edu/hubs/VGP/hub.txt&genome=%s&position=lastDbPos' target=_blank>%s</a></td>\n", ++$asmCount, $asmId, $commonName; + printf "<tr><th>%d</th><td align=center><a href='https://genome.ucsc.edu/cgi-bin/hgGateway?hubUrl=https://hgdownload.soe.ucsc.edu/hubs/VGP/hub.txt&genome=%s&position=lastDbPos' target=_blank>%s</a></td>\n", ++$asmCount, $asmId, $commonName; printf " <td align=center>%s</td>\n", $sciName; printf " <td align=left><a href='https://www.ncbi.nlm.nih.gov/assembly/%s_%s/' target=_blank>%s</a></td>\n", $gcPrefix, $asmAcc, $asmId; printf " <td align=right>%s</td>\n", commify($seqCount); printf " <td align=right>%s</td>\n", commify($totalSize); printf " <td align=right>%s</td>\n", commify($gapCount); printf " <td align=right>%s</td>\n", commify($gapSize); printf " <td align=right>%.2f</td>\n", $maskPerCent; printf "</tr>\n"; } } ############################################################################## ### main() ##############################################################################