d2c9857e3683a637750c3c81d2d6d870495cac53
ccpowell
Tue Jul 23 11:18:17 2019 -0700
Adding updates to docs for mysql to MariaDB changes, refs #23597
diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html
index 2207861..020c804 100755
--- src/hg/htdocs/goldenPath/help/hgTracksHelp.html
+++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html
@@ -1307,31 +1307,31 @@
contigFa.zip: The assembly sequence contigs, in one file per contig. All contigs
are in forward orientation relative to the chromosome. In some cases, this means that contigs will
be reversed relative to their orientation in the NCBI assembly. Repeats are shown in lower case;
non-repeating sequence is shown in upper case.
contigFaMasked.zip: The assembly sequence contigs, in one file per contig.
Repeats are masked by capital Ns; non-repeating sequence is shown in upper case.
contigOut.zip: RepeatMasker .out file for contigs, generated by
RepeatMasker at the -s sensitive setting.
contigTrf.zip: Tandem Repeats Finder locations, filtered to keep repeats with
period less than or equal to 12, and translated into one .bed file per contig.
database.zip: The Genome Browser database as tab-delimited files and associated
- MySQL table-creation tiles (eliminated in later assemblies due to size restrictions).
+ MariaDB (MySQL) table-creation tiles (eliminated in later assemblies due to size restrictions).
est.fa.zip: Sequences of all GenBank ESTs for the selected species.
liftAll.zip: The offsets of contigs within chromosomes.
mrna.zip: mRNAs in GenBank from the selected species.
refmrna.zip: RefSeq mRNAs from the selected species.
upstream1000.zip: Sequences 1000 bases upstream of annotated transcription start
of RefSeq genes. This includes only cases where the transcription start is annotated separately
from the coding region start.
upstream2000.zip: Same as upstream1000, but with 2000 bases.