Commits for hiram

v385_base to v386_preview (2019-07-22 to 2019-07-29) v386

88603b198e1787fb26de0479d1782532fbb71b67 Tue Jul 23 10:14:37 2019 -0700

• added cytoBand navigation refs #23734
  • src/hg/utils/automation/asmHubTrackDb.sh - lines changed 27, context: html, text, full: html, text
  • src/hg/utils/automation/doAssemblyHub.pl - lines changed 36, context: html, text, full: html, text

05219e2ffe569b3403687b96701006e2ff16116d Tue Jul 23 13:13:17 2019 -0700

• creating index from genePred file for assembly ncbiGene track searching refs #23734
  • src/hg/utils/automation/gpToIx.pl - lines changed 50, context: html, text, full: html, text

463df2eb31411fdb0a5462ff1ac4c7bc7c834ade Thu Jul 25 21:42:06 2019 -0700

• manage long sequence names going into RM and work around nested repeats errors refs #23734
  • src/hg/utils/automation/doRepeatMasker.pl - lines changed 45, context: html, text, full: html, text

96b647ceb7edf38ede9d998bead10ba08bd37386 Fri Jul 26 14:56:37 2019 -0700

• demonstrate bug in bigGenePred with no table type of track refs #23589
  • src/hg/hubApi/tests/expected/err40.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/makefile - lines changed 6, context: html, text, full: html, text

37c5f50c32c6088b1b8637759e4daef5f8107571 Mon Jul 29 10:16:52 2019 -0700

• v386 preview1
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text