55a7d0bdb8cb52deaf829c50d9b5db7c95018f79 jnavarr5 Mon Jul 29 08:40:19 2019 -0700 Updating http to https for monDom1, uiLinks cronjob. diff --git src/hg/makeDb/trackDb/opossum/multiz5way.html src/hg/makeDb/trackDb/opossum/multiz5way.html index 233d150..80d1c4c 100644 --- src/hg/makeDb/trackDb/opossum/multiz5way.html +++ src/hg/makeDb/trackDb/opossum/multiz5way.html @@ -106,31 +106,31 @@ </P> <P> Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, <EM>et al.</EM> <A HREF="https://genome.cshlp.org/content/15/8/1034" TARGET=_blank>Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes</A>. <em>Genome Res</em>. 2005 Aug;15(8):1034-50. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/16024819" target="_blank">16024819</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1182216/" target="_blank">PMC1182216</a> </p> <P> Yang Z. -<A HREF="http://www.genetics.org/content/139/2/993" +<A HREF="https://www.genetics.org/content/139/2/993" TARGET=_blank>A space-time process model for the evolution of DNA sequences</A>. <em>Genetics</em>. 1995 Feb;139(2):993-1005. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/7713447" target="_blank">7713447</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1206396/" target="_blank">PMC1206396</a> </p> <H3>Chain/Net:</H3> <P> Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D. <A HREF="https://www.pnas.org/content/100/20/11484" TARGET=_blank>Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes</A>. <em>Proc Natl Acad Sci U S A</em>. 2003 Sep 30;100(20):11484-9. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/14500911" target="_blank">14500911</a>; PMC: <a @@ -149,21 +149,21 @@ </p> <H3>Blastz:</H3> <P> Chiaromonte F, Yap VB, Miller W. <A HREF="http://psb.stanford.edu/psb-online/proceedings/psb02/chiaromonte.pdf" TARGET=_blank>Scoring pairwise genomic sequence alignments</A>. <EM>Pac Symp Biocomput</EM>. 2002:115-26. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/11928468" target="_blank">11928468</a> </P> <H3>Phylogenetic Tree:</H3> <P> Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E, Ryder OA, Stanhope MJ, de Jong WW, Springer MS. -<A HREF="http://science.sciencemag.org/content/294/5550/2348" +<A HREF="https://science.sciencemag.org/content/294/5550/2348" TARGET=_blank>Resolution of the early placental mammal radiation using Bayesian phylogenetics</A>. <EM>Science</EM>. 2001 Dec 14;294(5550):2348-51. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/11743200" target="_blank">11743200</a> </P>