cfe2ed16fc76ffdd709182eb83e80d3788805647 ann Thu Aug 1 08:59:07 2019 -0700 fixing BLAT link diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html index 020c804..2af0927 100755 --- src/hg/htdocs/goldenPath/help/hgTracksHelp.html +++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html @@ -846,32 +846,33 @@ <h3>Creating a custom annotation track from BLAT output</h3> <p> To make a custom track directly from BLAT, select the <a href="../../FAQ/FAQformat.html#format2">PSL format</a> output option. The resulting PSL track can be uploaded into the Genome Browser by pasting the data into the data text box on the Genome Browser <a href="../../cgi-bin/hgCustom?">Add Custom Tracks</a> page, accessed via the "add custom tracks" button on the Browser gateway and annotation tracks pages. See the <a href="#CustomTracks">Creating custom annotation tracks</a> section for more information.</p> <h3>Using BLAT for large batch jobs or commercial use</h3> <p> For large batch jobs or internal parameter changes, it is best to install command line BLAT on your own Linux server. Sources and executables are free for academic, personal, and non-profit purposes. -BLAT source may be downloaded from <a href="http://www.soe.ucsc.edu/~kent/src" -target="_blank">http://www.soe.ucsc.edu/~kent</a> (look for the <em>blatSrc*.zip</em> file with the +BLAT source may be downloaded from <a href="https://genome-test.gi.ucsc.edu/~kent/src/" +target="_blank">https://genome-test.gi.ucsc.edu/~kent/src/</a> +(look for the <em>blatSrc*.zip</em> file with the most recent date). For BLAT executables, go to <a href="http://genome-test.soe.ucsc.edu/~kent/exe/" target="_blank">http://genome-test.soe.ucsc.edu/~kent/exe/</a>; binaries are sorted by platform. Non-exclusive commercial licenses are available from the <a href="http://www.kentinformatics.com/" target="_blank">Kent Informatics</a> website.</p> <h3>BLAT documentation</h3> <p> For more information on the BLAT suite of programs, see the <a href="blatSpec.html">BLAT Program Specifications</a> and the <a href="../../FAQ/FAQblat.html">Blat section</a> of the Genome Browser FAQ.</p> <a name="IndivTracks"></a> <h2>Annotation track descriptions</h2> <p> Detailed information about an individual annotation track, including display characteristics,