a300d9e597facb8a3751a53f768084240a4d0d05
ccpowell
  Tue Jul 30 11:17:29 2019 -0700
Adding new assembly equCab3 to newsArch page #21223

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     </div>
     <div class="col-sm-3">
       <ul>
         <li><a href="#2004">2004 News</a></li>
         <li><a href="#2003">2003 News</a></li>
         <li><a href="#2002">2002 News</a></li>
         <li><a href="#2001">2001 News</a></li>
       </ul>
     </div>
   </div>
 </div>
 
 <!-- ============= 2019 archived news ============= -->
 <a name="2019"></a>
 
+<a name="07319"></a>
+<h2>Jul. 31, 2019 &nbsp;&nbsp; New Genome Browser: Horse, equCab3 (<em>Equus caballus</em>)</h2>
+<p>
+A genome browser is now available for the <em>Equus caballus</em> assembly released in Jan. 2018 by the
+<a href="https://louisville.edu/medicine/" target="_blank"> University of Louisville</a> (EquCab3.0).
+<h3>About the assembly:</h3>
+<ul>
+  <li><b>UCSC Genome Browser assembly ID:</b>  <a href="../../cgi-bin/hgGateway?db=equCab3" 
+  target="_blank">equCab3</a></li>
+  <li><b>Sequencing/Assembly provider ID:</b> <a href="https://louisville.edu/medicine/">
+University of Louisville</a></li>
+  <li><b>Assembly date:</b> Jan. 2018</li>
+  <li><B>Accession ID:</B> GCF_002863925.1</li>
+  <li><B>NCBI Genome ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/genome/145"
+TARGET="_blank">145</A> (<em>Equus caballus</em>)</li>
+  <li><B>NCBI Assembly ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/assembly/1512011"
+TARGET="_blank">1512011</A></li>
+  <li><B>NCBI BioProject ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/bioproject/421018"
+TARGET="_blank">421018</A></li>
+  <li><B>NCBI BioSample ID:</B> <A HREF="https://www.ncbi.nlm.nih.gov/biosample/SAMN02953672"
+TARGET="_blank">SAMN02953672</A></li>
+  <li><b>Scaffold count: </b>4,701</li>
+  <li><b>Total size: </b>2,506,966,135</li>
+  <li><a href="../goldenPath/credits.html#horse_credits" 
+target="_blank" >Acknowledgments</a></li>
+</ul>
+<h3>Data and Downloads:</h3>
+<ul>
+  <li><a href="../goldenPath/credits.html#horse_use" 
+target="_blank" >Data use conditions and restrictions</a></li>
+  <li><a href="../goldenPath/help/ftp.html" 
+target="_blank" >Rsync</a> and
+<a href="ftp://hgdownload.soe.ucsc.edu/goldenPath/equCab3/" 
+target="_blank" >FTP</a></li>
+  <li><a href="http://hgdownload.soe.ucsc.edu/downloads.html#horse"
+target="_blank" >Downloads page</a></li>
+</ul>
+</p>
+
 <a name="071919"></a>
 <h2>Jul. 19, 2019 &nbsp;&nbsp; New GENCODE V31 gene tracks for human, hg19 and hg38</h2>
 <p>
 We are pleased to announce the release of the new GENCODE Gene annotation tracks, which corresponds
 to the <a href="http://www.ensembl.info/2019/05/20/whats-coming-in-ensembl-97-ensembl-genomes-44/"
 target="_blank">Ensembl 97 release</a> for human assemblies, <a target="_blank"
 href="../../cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGencodeV31lift37">hg19/GRCh37</a> and
 <a target="_blank" href="../../cgi-bin/hgTrackUi?db=hg38&g=wgEncodeGencodeV31">hg38/GRCh38</a>.
 All GENCODE V31 annotations are available for hg38/GRCh38, and the annotation release was
 back-mapped to the hg19/GRCh37 assembly. For both hg19 and hg38, the GENCODE v31 gene set contains
 the following tracks:</p>
 <ul>
   <li>Basic - a subset of the <em>Comprehensive set</em>.</li>
   <li>Comprehensive - all GENCODE coding and non-coding transcript annotations, including
       polymorphic pseudogenes. This includes both manual and automatic annotations.</li>