c92f92f8a9c97137534faa084991ca8d0154bc5e dschmelt Mon Jul 29 16:10:35 2019 -0700 Editing CyVerse path and adding new image for #23921 diff --git src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html index 83175f0..2bd1321 100755 --- src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html +++ src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html @@ -884,31 +884,31 @@ Cyberduck to bulk transfer up to 80GB of data in one go.

After uploading some data, check the "Info-Type" of your BAM, bigWig, bigBed, etc. files. If an Info-Type has not been selected automatically or if it is incorrect, make sure it is correct. If uploading an assembly hub, assign the Info-Type "bed" to the 2bit file, as well as any text files, like your trackDb.txt, groups.txt, or description.html.

After giving an appropriate type (like "bam") to your binary files, you must update any text files to point to CyVerse locations. For example, your hub.txt will contain a line like:

genomesFile genomes.txt

Which must be edited to point to a CyVerse URL such as:

-
genomesFile https://de.cyverse.org/anon-files/iplant/home/...
+
genomesFile https://de.cyverse.org/dav-anon/iplant/home/...

Luckily, CyVerse allows you to edit these text files after uploading them, so you can create a "Send To: Genome Browser" link:

And then edit the fields of your hub.txt, genomes.txt, and trackDb.txt files like so:

To get the correct links to bigData files, again be sure to use the "Send To: Genome Browser" links in the menu.