eea98aa0298a44fdbab938c30f7bb4c9250a5fd6 dschmelt Wed Jul 31 09:43:36 2019 -0700 Fixing path to cyVerse files #23921 diff --git src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html index 2bd1321..7449ab1 100755 --- src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html +++ src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html @@ -884,31 +884,31 @@ Cyberduck to bulk transfer up to 80GB of data in one go.
After uploading some data, check the "Info-Type" of your BAM, bigWig, bigBed, etc. files. If an Info-Type has not been selected automatically or if it is incorrect, make sure it is correct. If uploading an assembly hub, assign the Info-Type "bed" to the 2bit file, as well as any text files, like your trackDb.txt, groups.txt, or description.html.
After giving an appropriate type (like "bam") to your binary files, you must update any text files to point to CyVerse locations. For example, your hub.txt will contain a line like:
genomesFile genomes.txt
Which must be edited to point to a CyVerse URL such as:
-genomesFile https://de.cyverse.org/dav-anon/iplant/home/...
+genomesFile https://data.cyverse.org/dav-anon/iplant/home/...
Luckily, CyVerse allows you to edit these text files after uploading them, so you can create a "Send To: Genome Browser" link:
And then edit the fields of your hub.txt, genomes.txt, and trackDb.txt files like so:
To get the correct links to bigData files, again be sure to use the "Send To: Genome Browser" links in the menu.