eea98aa0298a44fdbab938c30f7bb4c9250a5fd6 dschmelt Wed Jul 31 09:43:36 2019 -0700 Fixing path to cyVerse files #23921 diff --git src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html index 2bd1321..7449ab1 100755 --- src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html +++ src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html @@ -884,31 +884,31 @@ Cyberduck</a> to bulk transfer up to 80GB of data in one go.</p> <p> After uploading some data, check the "Info-Type" of your BAM, bigWig, bigBed, etc. files. If an Info-Type has not been selected automatically or if it is incorrect, make sure it is correct. If uploading an assembly hub, assign the Info-Type "bed" to the 2bit file, as well as any text files, like your trackDb.txt, groups.txt, or description.html. </p> <p> After giving an appropriate type (like "bam") to your binary files, you must update any text files to point to CyVerse locations. For example, your <em>hub.txt</em> will contain a line like: <pre><code>genomesFile genomes.txt</code></pre> <p>Which must be edited to point to a CyVerse URL such as:</p> -<pre><code>genomesFile https://de.cyverse.org/dav-anon/iplant/home/...</code></pre> +<pre><code>genomesFile https://data.cyverse.org/dav-anon/iplant/home/...</code></pre> <p>Luckily, CyVerse allows you to edit these text files after uploading them, so you can create a "Send To: Genome Browser" link:</p> <div class="text-center"> <img height="400px" src="../../images/cyverseSendToGenomeBrowser.png"> </div> <p>And then edit the fields of your <em>hub.txt</em>, <em>genomes.txt</em>, and <em>trackDb.txt</em> files like so:</p> <div class="text-center"> <img height="500px" width="1000px" src="../../images/cyverseEditedPaths.png"> </div> <p>To get the correct links to bigData files, again be sure to use the "Send To: Genome Browser" links in the menu. </p> <p>