2dc3fec412b817b015deb93f5862e57aea0661b7
hiram
  Thu Aug 1 16:06:05 2019 -0700
also update groups.txt if updated here and run up sym links during a make refs #23734

diff --git src/hg/makeDb/doc/VGP/makefile src/hg/makeDb/doc/VGP/makefile
index 0c8c72e..c38496e 100644
--- src/hg/makeDb/doc/VGP/makefile
+++ src/hg/makeDb/doc/VGP/makefile
@@ -1,27 +1,36 @@
 
+# for GNU Make automatic variable documentation, see also:
+# https://www.gnu.org/software/make/manual/html_node/Automatic-Variables.html
+
 destDir=/hive/data/genomes/asmHubs/VGP/ucscNames
 srcDir=${HOME}/kent/src/hg/makeDb/doc/VGP
 
-all:: ${destDir}/genomes.txt ${destDir}/hub.txt
-	ls -og ${destDir}/hubIndex.html ${destDir}/asmStatsVGP.html
-	ls -og ${destDir}/genomes.txt ${destDir}/commonNameOrder.list
+all:: ${destDir}/genomes.txt ${destDir}/hub.txt ${destDir}/groups.txt
+	@ls -og ${destDir}/hubIndex.html ${destDir}/asmStatsVGP.html
+	@ls -og ${destDir}/commonNameOrder.list
+	@ls -og $^
 
 classList=amphibian.list bird.list fish.list mammal.list reptile.list
 
 # this mkHubIndex.pl also writes out a commonNameOrder.list that
 # is used by mkAsmStats.pl and mkGenomes.pl to order their listings
 
 ${destDir}/hubIndex.html: ${srcDir}/mkHubIndex.pl ${srcDir}/commonNames.txt ${classList}
 	cd ${destDir} && ${srcDir}/mkHubIndex.pl > $@
 	chmod 775 $@
 
 ${destDir}/asmStatsVGP.html: ${destDir}/hubIndex.html ${srcDir}/mkAsmStats.pl
 	cd ${destDir} && ${srcDir}/mkAsmStats.pl > $@
 	chmod 775 $@
 
 ${destDir}/genomes.txt:  ${destDir}/asmStatsVGP.html ${srcDir}/mkGenomes.pl
 	cd ${destDir} && ${srcDir}/mkGenomes.pl > $@
+	cd ${destDir} && ${srcDir}/mkSymLinks.sh
 
 ${destDir}/hub.txt: ${srcDir}/hub.txt
 	rm $@
-	cp -p  ${srcDir}/hub.txt $@
+	cp -p  $< $@
+
+${destDir}/groups.txt: ${srcDir}/groups.txt
+	rm $@
+	cp -p  $< $@