d04d32c645edb005fc4811ea1f4e70de6c1c43a5 hiram Tue Jul 30 17:05:54 2019 -0700 fixup directory name clash for bedJoinTabOffset refs #23806 diff --git src/userApps/fetchKentSource.sh src/userApps/fetchKentSource.sh index 6f1f297..6727a92 100755 --- src/userApps/fetchKentSource.sh +++ src/userApps/fetchKentSource.sh @@ -13,30 +13,33 @@ # a 10-minute update cycle with live work taking place. # export branch="HEAD" # These selective git archive commands only work up to a certain size # of fetched source (number of arguments), hence the multiple set of # individual fetches to get all the parts rm -f part1Src.zip part2Src.zip part3Src.zip part4Src.zip part5Src.zip export partNumber=1 export ofN="of 5" # this util changed from being in a directory to being a script # the extract can't overwrite the directory with a file rm -fr kent/src/utils/uniprotLift +# v385 this util changed from a script by this name to a directory +# and the script changed to a .py name +rm -fr kent/src/utils/bedJoinTabOffset echo "fetch kent source part ${partNumber} ${ofN}" 1>&2 git archive --format=zip -9 --remote=git://genome-source.soe.ucsc.edu/kent.git \ --prefix=kent/ ${branch} \ src/machTest.sh \ src/checkUmask.sh \ src/ameme \ src/aladdin \ src/blat \ src/dnaDust \ src/fuse \ src/gfClient \ src/gfServer \ src/index \ src/makefile \