89cf9d0784b0c1529f4a3638c3255f5b407be611 hiram Wed Jul 31 18:42:44 2019 -0700 add makefile to function from this source directory and cleaner html output via W3C validator checking refs #23734 diff --git src/hg/makeDb/doc/VGP/makefile src/hg/makeDb/doc/VGP/makefile new file mode 100644 index 0000000..4b4cabf --- /dev/null +++ src/hg/makeDb/doc/VGP/makefile @@ -0,0 +1,24 @@ + +destDir=/hive/data/genomes/asmHubs/VGP/ucscNames +srcDir=${HOME}/kent/src/hg/makeDb/doc/VGP + +all:: ${destDir}/genomes.txt + ls -og ${destDir}/hubIndex.html ${destDir}/asmStatsVGP.html + ls -og ${destDir}/genomes.txt ${destDir}/commonNameOrder.list + +classList=amphibian.list bird.list fish.list mammal.list reptile.list + +# this mkHubIndex.pl also writes out a commonNameOrder.list that +# is used by mkAsmStats.pl and mkGenomes.pl to order their listings + +${destDir}/hubIndex.html: ${srcDir}/mkHubIndex.pl ${srcDir}/commonNames.txt ${classList} + cd ${destDir} && ${srcDir}/mkHubIndex.pl > $@ + chmod 775 $@ + +${destDir}/asmStatsVGP.html: ${destDir}/hubIndex.html ${srcDir}/mkAsmStats.pl + cd ${destDir} && ${srcDir}/mkAsmStats.pl > $@ + chmod 775 $@ + +${destDir}/genomes.txt: ${destDir}/asmStatsVGP.html ${srcDir}/mkGenomes.pl + cd ${destDir} && ${srcDir}/mkGenomes.pl > $@ +