cef25c4a65ad872bda85799c6e2a6d237420c1bc hiram Fri Aug 2 21:46:29 2019 -0700 now symlink in the photograph for the gateway page refs #23734 diff --git src/hg/makeDb/doc/VGP/mkSymLinks.sh src/hg/makeDb/doc/VGP/mkSymLinks.sh index 52c2704..6581962 100755 --- src/hg/makeDb/doc/VGP/mkSymLinks.sh +++ src/hg/makeDb/doc/VGP/mkSymLinks.sh @@ -1,26 +1,29 @@ #!/bin/bash set -beEu -o pipefail cd /hive/data/genomes/asmHubs/VGP/ucscNames ls -d */bbi | sed -e 's#/bbi##;' | while read asmId do mkdir -p /gbdb/hubs/VGP/genomes/$asmId /gbdb/hubs/VGP/genomes/$asmId/html rm -f /gbdb/hubs/VGP/genomes/$asmId/bbi rm -f /gbdb/hubs/VGP/genomes/$asmId/ixIxx rm -f /gbdb/hubs/VGP/genomes/$asmId/html/*.html + rm -f /gbdb/hubs/VGP/genomes/$asmId/html/*.jpg + rm -f /gbdb/hubs/VGP/genomes/$asmId/html/*.png rm -f /gbdb/hubs/VGP/genomes/$asmId/$asmId.2bit rm -f /gbdb/hubs/VGP/genomes/$asmId/$asmId.genomes.txt rm -f /gbdb/hubs/VGP/genomes/$asmId/$asmId.trackDb.txt rm -f /gbdb/hubs/VGP/genomes/$asmId/$asmId.chrom.sizes rm -f /gbdb/hubs/VGP/genomes/$asmId/${asmId}_assembly_report.txt ln -s `pwd -P`/$asmId/bbi /gbdb/hubs/VGP/genomes/$asmId/bbi ln -s `pwd -P`/$asmId/ixIxx /gbdb/hubs/VGP/genomes/$asmId/ixIxx ln -s `pwd -P`/$asmId/html/*.html /gbdb/hubs/VGP/genomes/$asmId/html/ + ln -s `pwd -P`/$asmId/html/*.jpg /gbdb/hubs/VGP/genomes/$asmId/html/ ln -s `pwd -P`/$asmId/trackData/addMask/$asmId.masked.2bit /gbdb/hubs/VGP/genomes/$asmId/$asmId.2bit ln -s `pwd -P`/$asmId/$asmId.genomes.txt /gbdb/hubs/VGP/genomes/$asmId ln -s `pwd -P`/$asmId/$asmId.chrom.sizes /gbdb/hubs/VGP/genomes/$asmId ln -s `pwd -P`/$asmId/$asmId.trackDb.txt /gbdb/hubs/VGP/genomes/$asmId ln -s `pwd -P`/$asmId/download/${asmId}_assembly_report.txt /gbdb/hubs/VGP/genomes/$asmId/ done